Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0194.Seq
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ... 153 2e-38
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 29 0.46
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 27 1.4
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 3.3
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 26 4.3
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe... 25 7.5
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.5
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.5
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 25 10.0
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 25 10.0
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 25 10.0
>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 153 bits (371), Expect = 2e-38
Identities = 64/84 (76%), Positives = 77/84 (91%)
Frame = -1
Query: 507 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 328
RTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG +G PHTV
Sbjct: 94 RTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTV 153
Query: 327 PCKVTGKCGSVTVRLIPAPRGTGI 256
P KV+GKCGSVTVRL+PAPRG G+
Sbjct: 154 PVKVSGKCGSVTVRLVPAPRGAGL 177
Score = 67.7 bits (158), Expect = 1e-12
Identities = 29/64 (45%), Positives = 40/64 (62%)
Frame = -3
Query: 253 SAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSP 74
+APV K+ LQ+AG++DCYT +RGST TLGNF LTP+LW + P ++P
Sbjct: 179 AAPVTKRFLQLAGIEDCYTQSRGSTKTLGNFVKAAFAAASLTYGILTPNLWAERPFGQTP 238
Query: 73 YSEF 62
E+
Sbjct: 239 IEEY 242
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 29.1 bits (62), Expect = 0.46
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -1
Query: 237 RSFFRWLVYRTATPQLVVQL 178
RS F+WL+ TATP+L+V L
Sbjct: 69 RSVFQWLIALTATPRLLVLL 88
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -3
Query: 304 WFCNSPA-DSCPSWYWNWSAPVPKKLLQMAGVQDCYT 197
W +P D WY W + PK LL A +Q ++
Sbjct: 625 WLTEAPNFDEASEWYTWWKSVFPKDLLSNAYIQQGFS 661
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 26.2 bits (55), Expect = 3.3
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = -2
Query: 548 SKDHA*QKQTRAGRAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCLFYQFE 369
S +H+ Q+Q RA+ SR L+P + V + A SPL +A L+S +
Sbjct: 14 SSNHSMQRQKTESRANFSRRLVPSDSNRKP---VPNGASNSPLSRDAASHLISTIETSIM 70
Query: 368 EVTGVTR 348
++ VT+
Sbjct: 71 KLLVVTK 77
>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 252
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 343 KATHRPLQGHRQVWFCNSPADSCPSWYWN 257
+A L G + C + SCPS++WN
Sbjct: 153 RADRAKLDGLYECILCACCSTSCPSYWWN 181
>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -3
Query: 304 WFCNSPADSCPSWYWNWSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 161
W CNS + P+W + +P+ Q + + G+ GT+G F
Sbjct: 366 WKCNSLTKTLPNWK---TRGIPEYCAQPSMAEGMIRCKPGAGGTIGFF 410
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 337 WLSDLVTPVTSSNW*NRQLSKDNSASN 417
++S++VTP T++NW N S +S S+
Sbjct: 192 YVSEVVTPTTTNNW-NSSSSFTSSTSS 217
>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 95
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 138 LPRHMPTSLLTCGGT 94
LPR +PTSLLT G+
Sbjct: 27 LPRSIPTSLLTAAGS 41
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 24.6 bits (51), Expect = 10.0
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = -2
Query: 503 HVSRHLL-PLATTTVILV-WV*SAARKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 330
+V HL P T L W + + + + F +L L +FE + SE H P
Sbjct: 613 YVESHLNGPTERTAASLTNWYSTLLKNTQIRFRKILRFSETLNSRFENASDFVISEGHLP 672
Query: 329 SL 324
L
Sbjct: 673 DL 674
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 418 GSGDFLAALHTQTNMTVVVANGNKCLETCA 507
G+GD H +T T +V +K L+ CA
Sbjct: 117 GTGDARLLKHKETGKTRLVMRRDKTLKVCA 146
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 24.6 bits (51), Expect = 10.0
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +1
Query: 64 TLSMET*SAGCPSTSQE*GRHMSWQWQHMWL*QNFPRCQLNHELRCSSPVHQP 222
TLS + S G P + GRH S + W+ Q F + + S H P
Sbjct: 461 TLSFTSGSEGIPKGVK--GRHFSLAYYFDWMAQEFNLSESDRFTMLSGIAHDP 511
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,250
Number of Sequences: 5004
Number of extensions: 53459
Number of successful extensions: 150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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