Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0194.Seq
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 172 1e-43
07_01_0756 + 5819367-5820038,5820847-5821005 169 1e-42
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 67 8e-12
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 38 0.005
02_03_0407 - 18675368-18675378,18676047-18676977,18677323-186773... 30 1.1
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613... 30 1.4
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 29 2.5
08_01_0312 + 2764744-2767390,2767632-2767990 28 4.4
12_02_0387 + 18453328-18453456,18453699-18453836,18454085-184541... 27 7.7
09_04_0333 + 16774758-16774970,16775078-16775554,16775791-16775874 27 7.7
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 172 bits (419), Expect = 1e-43
Identities = 75/84 (89%), Positives = 83/84 (98%)
Frame = -1
Query: 507 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 328
RTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTV
Sbjct: 104 RTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPHTV 163
Query: 327 PCKVTGKCGSVTVRLIPAPRGTGI 256
PCKVTGKCGSVTVR++PAPRG+GI
Sbjct: 164 PCKVTGKCGSVTVRMVPAPRGSGI 187
Score = 71.3 bits (167), Expect = 5e-13
Identities = 32/64 (50%), Positives = 41/64 (64%)
Frame = -3
Query: 253 SAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSP 74
+A VPKK+LQ AG++D +TS+RGST TLGNF +LTPD WRD KSP
Sbjct: 189 AARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPDFWRDTKFVKSP 248
Query: 73 YSEF 62
+ E+
Sbjct: 249 FQEY 252
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 169 bits (412), Expect = 1e-42
Identities = 74/84 (88%), Positives = 82/84 (97%)
Frame = -1
Query: 507 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 328
RTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 107 RTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 166
Query: 327 PCKVTGKCGSVTVRLIPAPRGTGI 256
PCKVTGKCGSVTVR++PAPRG+GI
Sbjct: 167 PCKVTGKCGSVTVRMVPAPRGSGI 190
Score = 67.7 bits (158), Expect = 6e-12
Identities = 30/64 (46%), Positives = 41/64 (64%)
Frame = -3
Query: 253 SAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSP 74
+A VPKK+LQ AG++D +TS+RGST TLGNF +LTPD WR+ K+P
Sbjct: 192 AAHVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPDFWRETRFIKTP 251
Query: 73 YSEF 62
+ E+
Sbjct: 252 FQEY 255
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 67.3 bits (157), Expect = 8e-12
Identities = 39/79 (49%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = -1
Query: 489 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTVPCKVT 313
FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV CKV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKVA 56
Query: 312 GKCGSVTVRLIPAPRGTGI 256
K GSVTVR++ P G+ +
Sbjct: 57 DKYGSVTVRMMLPPMGSSV 75
Score = 44.0 bits (99), Expect = 8e-05
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = -3
Query: 244 VPKKLLQMAGVQDCYTSARGSTGTLGNF 161
VPKK+L+ AG++D +TS+RGST TL NF
Sbjct: 80 VPKKVLKFAGIEDVFTSSRGSTKTLSNF 107
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = -1
Query: 498 FKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPV 373
F+A V +GD GH+G+GV +KEV AI A + + +++ V
Sbjct: 192 FRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNLVTV 233
>02_03_0407 -
18675368-18675378,18676047-18676977,18677323-18677376,
18677809-18678039,18678112-18678319,18678405-18678433,
18678638-18678706,18678832-18678893,18679056-18679133,
18679243-18679315,18681135-18681260
Length = 623
Score = 30.3 bits (65), Expect = 1.1
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Frame = +2
Query: 215 TSHLKKLLR-NWRRPIPVPRGAGISRTVTEPHLPVTLQGTVCGFPILLPQ*PLRTGKTDN 391
T LKKL R +W PIP+ G+G H P P P +R + +
Sbjct: 423 TDDLKKLKRESWSGPIPIKAGSGGKPFSQADHRPSPTMAYPGAMPAAKPH--VRHASSSS 480
Query: 392 LARIIAPRMA---VATSL----LHFTPKP 457
++ ++P+M+ A+SL LH P P
Sbjct: 481 VSPKVSPKMSPVPPASSLKISELHLLPLP 509
>07_03_0681 +
20659789-20659839,20660030-20660170,20661294-20661399,
20661625-20661806,20661888-20662113,20662198-20662624,
20662844-20663189,20663271-20663849
Length = 685
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 316 DLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMT 465
DL D ++ + + + W NR +++ + G G ALH TNM+
Sbjct: 354 DLDEDNRGMAQIRDDLAGAMWNNRGMAEAGGGNGGHGGHHGALHWTTNMS 403
>09_06_0198 -
21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 325 RDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANG 483
R VW++D TPVT+S+ LS NS++ D + TN+T A G
Sbjct: 105 RTVVWVADRGTPVTNSSSSAPTLSLTNSSNLVLSDADGGVRWTTNITDDAAGG 157
>08_01_0312 + 2764744-2767390,2767632-2767990
Length = 1001
Score = 28.3 bits (60), Expect = 4.4
Identities = 21/44 (47%), Positives = 23/44 (52%)
Frame = -2
Query: 515 AGRAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCL 384
A HV LLPLAT T +A +PLP ALLSL S L
Sbjct: 3 AAAVHVLLLLLPLATIT--------SASSAPLPLLALLSLRSSL 38
>12_02_0387 +
18453328-18453456,18453699-18453836,18454085-18454144,
18461532-18462591,18463022-18463521
Length = 628
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 343 KATHRPLQGHRQVWFCNSPADSCPSW 266
K H L G + W+ N PA+S SW
Sbjct: 243 KVIHLALDGIARFWYFNLPANSIYSW 268
>09_04_0333 + 16774758-16774970,16775078-16775554,16775791-16775874
Length = 257
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 276 APRGTGIGLRQFLRSFFRWLVYRT 205
APRG F+R++FR+L YR+
Sbjct: 80 APRGKSPAFSAFVRAYFRFLNYRS 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,093,742
Number of Sequences: 37544
Number of extensions: 403160
Number of successful extensions: 1069
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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