Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0194.Seq
(558 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 174 4e-44
SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11) 32 0.28
SB_41690| Best HMM Match : DSL (HMM E-Value=0) 32 0.37
SB_38056| Best HMM Match : OAD_gamma (HMM E-Value=8) 32 0.37
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 3.4
SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0) 28 4.5
SB_48975| Best HMM Match : zf-CHY (HMM E-Value=8.5) 28 5.9
SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07) 27 7.9
SB_16347| Best HMM Match : LRR_1 (HMM E-Value=0.37) 27 7.9
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 174 bits (424), Expect = 4e-44
Identities = 79/84 (94%), Positives = 82/84 (97%)
Frame = -1
Query: 507 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 328
RTRFKAFVAIGD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 69 RTRFKAFVAIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTV 128
Query: 327 PCKVTGKCGSVTVRLIPAPRGTGI 256
PCKVTGKCGS VRLIPAPRGTGI
Sbjct: 129 PCKVTGKCGSTRVRLIPAPRGTGI 152
Score = 85.0 bits (201), Expect = 4e-17
Identities = 38/64 (59%), Positives = 44/64 (68%)
Frame = -3
Query: 253 SAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSP 74
SAPVPKKLLQMAG++DCYTS RG T TLGNF YLTPD+W++ TK+P
Sbjct: 154 SAPVPKKLLQMAGIEDCYTSTRGQTATLGNFAKATFAAISETYAYLTPDMWKETVFTKTP 213
Query: 73 YSEF 62
Y EF
Sbjct: 214 YQEF 217
>SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11)
Length = 733
Score = 32.3 bits (70), Expect = 0.28
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -1
Query: 480 IGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLP-VRRGYWGNKIGKPHTVPCKVTGKC 304
IGD+ G + V+ +K + G++ L+ P +RRG G++ KPH+ P ++ +
Sbjct: 137 IGDSGGIDTMDVR-NKATGSVAWGSVTKRPLTSTPDIRRGQTGSEFRKPHSEPRFMSARF 195
Query: 303 GS 298
GS
Sbjct: 196 GS 197
>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
Length = 2798
Score = 31.9 bits (69), Expect = 0.37
Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Frame = -3
Query: 484 CHWRQQRSYWFGCEVQQGSRHCHSRRYY-PC*VVCFTSSKRLLG*QD------RKATHRP 326
C R + F C GS+ CH Y C + C + G D RK H
Sbjct: 1111 CTPRNDSTGHFSCNETTGSKDCHDGWYGGTCSIYCLPHNGSS-GHYDCDASSGRKTCHVD 1169
Query: 325 LQGHRQVWFCNSPADSCPSWYWNWSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 161
G FC+ P DS +Y N + + G ++C T + S G+ G++
Sbjct: 1170 WYGINCTVFCSKPRDSKDHYYCNVTNGEKVCTEDLYG-RNCTTYCKSSNGSDGHY 1223
>SB_38056| Best HMM Match : OAD_gamma (HMM E-Value=8)
Length = 176
Score = 31.9 bits (69), Expect = 0.37
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -1
Query: 285 LIPAPRGTGIGLRQFLRSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTSLL 109
++P PR G + + + F + R TP VV A E +L + P+ +H+ S +
Sbjct: 101 IVPDPRDDGKAVERVFQKVFYYPARRYPTPDAVVPRATMESILPALLGPIVKHLAKSAI 159
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = -1
Query: 381 LPVRRGYWGNKIG--KPHTVPCKVTGKCGSVTVRLIPAPRGT 262
LP GYW N G P PC V C + + P P GT
Sbjct: 3355 LPCPAGYWCNIKGLADPSISPCPVGHYCLNAIDKPTPCPNGT 3396
>SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 391 LSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCARPARVC 525
+S +N NG ++A T ++ + + L TC++P VC
Sbjct: 961 ISYNNVGQNGKKVIISACETSKSVRHLYHENDSILNTCSKPQSVC 1005
>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2353
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +1
Query: 283 QPDCYRTTLAGDLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNM 462
+P C + + D++ + +W + V S +W N +N + D L N+
Sbjct: 626 RPKCKVSCMLNDISTEALWDTGAQISVLSKSWVN-----ENGLNTDLQDIETLLGRDRNL 680
Query: 463 TVVVANGNK 489
V ANG++
Sbjct: 681 NVSAANGSE 689
>SB_48975| Best HMM Match : zf-CHY (HMM E-Value=8.5)
Length = 278
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -3
Query: 520 HVPDAHTFQGICCHWRQQRSYWFGCEVQQGSRHCHSRRYYPC 395
H D HT QG CH Q + C QG CH+ + Y C
Sbjct: 38 HGYDCHTVQGYDCHTVQ----GYDCHTVQG-YDCHTVQGYDC 74
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -3
Query: 520 HVPDAHTFQGICCHWRQQRSYWFGCEVQQGSRHCHSRRYYPC 395
H D HT QG CH Q + C QG CH+ + Y C
Sbjct: 158 HGYDCHTVQGYDCHTVQ----GYDCHTVQG-YDCHTVQGYDC 194
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -3
Query: 520 HVPDAHTFQGICCHWRQQRSYWFGCEVQQGSRHCHSRRYYPC 395
H D HT QG CH + + C QG CH+ + Y C
Sbjct: 86 HGYDCHTVQGYDCH----TVHGYDCHTVQG-YDCHTVQGYDC 122
>SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07)
Length = 956
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -3
Query: 325 LQGHRQVWFCNS-PADSCPS 269
LQ HR WFC S P +CP+
Sbjct: 87 LQSHRHPWFCVSCPTVTCPT 106
>SB_16347| Best HMM Match : LRR_1 (HMM E-Value=0.37)
Length = 320
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 391 LSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCARPARVCFCQA*SLEP 552
+S +N NG ++A T ++ + + L TC++P VC EP
Sbjct: 226 ISYNNVGQNGKKVIISACETSKSVRHLYHEYDSILNTCSKPHSVCVVPRQLYEP 279
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,580,633
Number of Sequences: 59808
Number of extensions: 447663
Number of successful extensions: 1173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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