Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0194.Seq
         (558 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...   179   3e-45
U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...   179   3e-45
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...   179   3e-45
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...   179   3e-45
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...   179   3e-45
AF158179-1|AAD48780.1| 1711|Drosophila melanogaster Chiffon-2 pr...    29   5.6  
AF158178-1|AAD48779.1| 1695|Drosophila melanogaster Chiffon prot...    29   5.6  
AE014134-2711|AAG22437.1| 1695|Drosophila melanogaster CG5813-PB...    29   5.6  
AE014134-2710|AAF53530.1| 1711|Drosophila melanogaster CG5813-PA...    29   5.6  
M33753-1|AAA28428.1| 2146|Drosophila melanogaster crumbs protein...    28   9.8  
AY118509-1|AAM49878.1|  487|Drosophila melanogaster LD13435p pro...    28   9.8  
AY071302-1|AAL48924.1|  302|Drosophila melanogaster RE33041p pro...    28   9.8  
AY051931-1|AAK93355.1|  315|Drosophila melanogaster LD41235p pro...    28   9.8  
AE014297-3522|AAF56276.1| 2146|Drosophila melanogaster CG6383-PA...    28   9.8  
AE014297-3521|ABI31202.1| 2189|Drosophila melanogaster CG6383-PB...    28   9.8  
AE014296-2598|AAF49566.1|  315|Drosophila melanogaster CG17033-P...    28   9.8  
AE014134-486|AAF51198.2|  302|Drosophila melanogaster CG2973-PA ...    28   9.8  

>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score =  179 bits (435), Expect = 3e-45
 Identities = 82/84 (97%), Positives = 84/84 (100%)
 Frame = -1

Query: 507 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 328
           RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 104 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 163

Query: 327 PCKVTGKCGSVTVRLIPAPRGTGI 256
           PCKVTGKCGSV+VRLIPAPRGTGI
Sbjct: 164 PCKVTGKCGSVSVRLIPAPRGTGI 187



 Score = 85.4 bits (202), Expect = 5e-17
 Identities = 38/64 (59%), Positives = 46/64 (71%)
 Frame = -3

Query: 253 SAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSP 74
           SAPVP+KLL MAG++DCYTSARGSTGTLGNF             YLTPDLW+++PL  +P
Sbjct: 189 SAPVPRKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTP 248

Query: 73  YSEF 62
           Y  +
Sbjct: 249 YQAY 252


>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  179 bits (435), Expect = 3e-45
 Identities = 82/84 (97%), Positives = 84/84 (100%)
 Frame = -1

Query: 507 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 328
           RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 104 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 163

Query: 327 PCKVTGKCGSVTVRLIPAPRGTGI 256
           PCKVTGKCGSV+VRLIPAPRGTGI
Sbjct: 164 PCKVTGKCGSVSVRLIPAPRGTGI 187



 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 39/64 (60%), Positives = 46/64 (71%)
 Frame = -3

Query: 253 SAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSP 74
           SAPVPKKLL MAG++DCYTSARGSTGTLGNF             YLTPDLW+++PL  +P
Sbjct: 189 SAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTP 248

Query: 73  YSEF 62
           Y  +
Sbjct: 249 YQAY 252


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  179 bits (435), Expect = 3e-45
 Identities = 82/84 (97%), Positives = 84/84 (100%)
 Frame = -1

Query: 507 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 328
           RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 104 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 163

Query: 327 PCKVTGKCGSVTVRLIPAPRGTGI 256
           PCKVTGKCGSV+VRLIPAPRGTGI
Sbjct: 164 PCKVTGKCGSVSVRLIPAPRGTGI 187



 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 39/64 (60%), Positives = 46/64 (71%)
 Frame = -3

Query: 253 SAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSP 74
           SAPVPKKLL MAG++DCYTSARGSTGTLGNF             YLTPDLW+++PL  +P
Sbjct: 189 SAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTP 248

Query: 73  YSEF 62
           Y  +
Sbjct: 249 YQAY 252


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score =  179 bits (435), Expect = 3e-45
 Identities = 82/84 (97%), Positives = 84/84 (100%)
 Frame = -1

Query: 507 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 328
           RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 104 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 163

Query: 327 PCKVTGKCGSVTVRLIPAPRGTGI 256
           PCKVTGKCGSV+VRLIPAPRGTGI
Sbjct: 164 PCKVTGKCGSVSVRLIPAPRGTGI 187



 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 39/64 (60%), Positives = 46/64 (71%)
 Frame = -3

Query: 253 SAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSP 74
           SAPVPKKLL MAG++DCYTSARGSTGTLGNF             YLTPDLW+++PL  +P
Sbjct: 189 SAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTP 248

Query: 73  YSEF 62
           Y  +
Sbjct: 249 YQAY 252


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score =  179 bits (435), Expect = 3e-45
 Identities = 82/84 (97%), Positives = 84/84 (100%)
 Frame = -1

Query: 507 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 328
           RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 104 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 163

Query: 327 PCKVTGKCGSVTVRLIPAPRGTGI 256
           PCKVTGKCGSV+VRLIPAPRGTGI
Sbjct: 164 PCKVTGKCGSVSVRLIPAPRGTGI 187



 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 39/64 (60%), Positives = 46/64 (71%)
 Frame = -3

Query: 253 SAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSP 74
           SAPVPKKLL MAG++DCYTSARGSTGTLGNF             YLTPDLW+++PL  +P
Sbjct: 189 SAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTP 248

Query: 73  YSEF 62
           Y  +
Sbjct: 249 YQAY 252


>AF158179-1|AAD48780.1| 1711|Drosophila melanogaster Chiffon-2
            protein.
          Length = 1711

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 434  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 330
            RKSP    + L+L+SC+  Q ++    T SE+  P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070


>AF158178-1|AAD48779.1| 1695|Drosophila melanogaster Chiffon protein.
          Length = 1695

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 434  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 330
            RKSP    + L+L+SC+  Q ++    T SE+  P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070


>AE014134-2711|AAG22437.1| 1695|Drosophila melanogaster CG5813-PB,
            isoform B protein.
          Length = 1695

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 434  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 330
            RKSP    + L+L+SC+  Q ++    T SE+  P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070


>AE014134-2710|AAF53530.1| 1711|Drosophila melanogaster CG5813-PA,
            isoform A protein.
          Length = 1711

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 434  RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 330
            RKSP    + L+L+SC+  Q ++    T SE+  P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070


>M33753-1|AAA28428.1| 2146|Drosophila melanogaster crumbs protein
            protein.
          Length = 2146

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 457  NMTVVVANGNKCLETC-ARPARVCFC 531
            N T + +NG +C+E+C A+P   C C
Sbjct: 2033 NATDLCSNGGRCVESCGAKPDYYCEC 2058


>AY118509-1|AAM49878.1|  487|Drosophila melanogaster LD13435p
           protein.
          Length = 487

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 457 NMTVVVANGNKCLETC-ARPARVCFC 531
           N T + +NG +C+E+C A+P   C C
Sbjct: 374 NATDLCSNGGRCVESCGAKPDYYCEC 399


>AY071302-1|AAL48924.1|  302|Drosophila melanogaster RE33041p
           protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 340 LSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTN 459
           L+ L T     N+  ++    NSAS+   DFL+  HT +N
Sbjct: 11  LALLATSQAEYNYNEKEAKAANSASSSGEDFLSDYHTPSN 50


>AY051931-1|AAK93355.1|  315|Drosophila melanogaster LD41235p
           protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 212 YTSHLKKLLRNWRRPIPVPRGAG 280
           Y SHL + + N +RP P  +G G
Sbjct: 99  YNSHLDECIHNPKRPFPCEKGCG 121


>AE014297-3522|AAF56276.1| 2146|Drosophila melanogaster CG6383-PA,
            isoform A protein.
          Length = 2146

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 457  NMTVVVANGNKCLETC-ARPARVCFC 531
            N T + +NG +C+E+C A+P   C C
Sbjct: 2033 NATDLCSNGGRCVESCGAKPDYYCEC 2058


>AE014297-3521|ABI31202.1| 2189|Drosophila melanogaster CG6383-PB,
            isoform B protein.
          Length = 2189

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 457  NMTVVVANGNKCLETC-ARPARVCFC 531
            N T + +NG +C+E+C A+P   C C
Sbjct: 2076 NATDLCSNGGRCVESCGAKPDYYCEC 2101


>AE014296-2598|AAF49566.1|  315|Drosophila melanogaster CG17033-PA
           protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 212 YTSHLKKLLRNWRRPIPVPRGAG 280
           Y SHL + + N +RP P  +G G
Sbjct: 99  YNSHLDECIHNPKRPFPCEKGCG 121


>AE014134-486|AAF51198.2|  302|Drosophila melanogaster CG2973-PA
           protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 340 LSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTN 459
           L+ L T     N+  ++    NSAS+   DFL+  HT +N
Sbjct: 11  LALLATSQAEYNYNEKEAKAANSASSSGEDFLSDYHTPSN 50


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,263,777
Number of Sequences: 53049
Number of extensions: 667748
Number of successful extensions: 1921
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1921
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2151905496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)