Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0194.Seq
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   165   3e-41
U10401-4|AAN65289.1|  937|Caenorhabditis elegans Myc and mondo-l...    32   0.32 
U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-l...    32   0.32 
AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interacto...    32   0.32 
AF213473-1|AAL50027.1|  913|Caenorhabditis elegans basic helix-l...    32   0.32 
Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm rece...    28   5.2  
Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    27   6.9  
AF098999-3|AAC68726.2|  445|Caenorhabditis elegans Hypothetical ...    27   6.9  
AC006794-1|AAK68504.1|  407|Caenorhabditis elegans Hypothetical ...    27   6.9  
Z81454-2|CAB03804.2|  346|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  165 bits (400), Expect = 3e-41
 Identities = 76/95 (80%), Positives = 83/95 (87%)
 Frame = -1

Query: 540 SCLTETNTCRTRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGY 361
           S + +  T   RTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRGY
Sbjct: 106 SPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGY 165

Query: 360 WGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGI 256
           WGNKIG PHTVPCKVTGKC SV VRLIPAPRGTGI
Sbjct: 166 WGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGI 200



 Score = 80.2 bits (189), Expect = 9e-16
 Identities = 37/61 (60%), Positives = 43/61 (70%)
 Frame = -3

Query: 253 SAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSP 74
           SAPVPKKLL MAG++DCYT+A+GST TLGNF             YLTPDLW++  L KSP
Sbjct: 202 SAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAKATYAALQRTYSYLTPDLWKEEALEKSP 261

Query: 73  Y 71
           Y
Sbjct: 262 Y 262


>U10401-4|AAN65289.1|  937|Caenorhabditis elegans Myc and mondo-like
           protein 1, isoformb protein.
          Length = 937

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 200 VAVLYTSHLKKLLRNWRRPIPVPRGAGISRTVTEPHLPVTLQGT 331
           V++ + SH++++L N    +P P  + +  T  +P+LP  LQ T
Sbjct: 475 VSLPHQSHVERILNNQPPLVPPPSRSNLLPTQNDPYLPQFLQST 518


>U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-like
           protein 1, isoforma protein.
          Length = 1009

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 200 VAVLYTSHLKKLLRNWRRPIPVPRGAGISRTVTEPHLPVTLQGT 331
           V++ + SH++++L N    +P P  + +  T  +P+LP  LQ T
Sbjct: 475 VSLPHQSHVERILNNQPPLVPPPSRSNLLPTQNDPYLPQFLQST 518


>AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interactor
           protein.
          Length = 1009

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 200 VAVLYTSHLKKLLRNWRRPIPVPRGAGISRTVTEPHLPVTLQGT 331
           V++ + SH++++L N    +P P  + +  T  +P+LP  LQ T
Sbjct: 475 VSLPHQSHVERILNNQPPLVPPPSRSNLLPTQNDPYLPQFLQST 518


>AF213473-1|AAL50027.1|  913|Caenorhabditis elegans basic
           helix-loop-helix leucinezipper WBSCR14-like protein
           protein.
          Length = 913

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 200 VAVLYTSHLKKLLRNWRRPIPVPRGAGISRTVTEPHLPVTLQGT 331
           V++ + SH++++L N    +P P  + +  T  +P+LP  LQ T
Sbjct: 379 VSLPHQSHVERILNNQPPLVPPPSRSNLLPTQNDPYLPQFLQST 422


>Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical
           protein T08G11.3 protein.
          Length = 601

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = +1

Query: 244 LAQTNSSTTRGRNQPDCYRTTLAGDLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGS 423
           +  TN ++T   N P    +T   D  R     S L  P +SSN  +   SK ++ +   
Sbjct: 418 IRNTNDTSTHSINAPFEGESTNHADFQRKQAEKSKLTRPHSSSNLLSPNASKFDATTTTR 477

Query: 424 GDFLAALHTQ 453
            DF+   H +
Sbjct: 478 ADFIQKPHVR 487


>Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical
           protein C30F2.3 protein.
          Length = 403

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 364 TSSNW*NRQLSKDNSASNGSG 426
           TS+NW N QL   NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329


>AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm
           receptor protein 30 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 237 RSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTSLLTC 103
           R FF+ L+Y+  +P     + P  ++L      L  ++PT L+ C
Sbjct: 241 RQFFKSLIYQITSPTFTFYI-PAILILTVPFFDLKFNLPTGLIVC 284


>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +3

Query: 432 PCCTSHPNQYDRC--CRQWQQMP*NVCASGTCLF 527
           P C +   +Y  C  C+QWQ  P N  A   C F
Sbjct: 648 PTCPTKCVEYKNCVMCQQWQTGPLNETACDQCEF 681


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +3

Query: 432 PCCTSHPNQYDRC--CRQWQQMP*NVCASGTCLF 527
           P C +   +Y  C  C+QWQ  P N  A   C F
Sbjct: 648 PTCPTKCVEYKNCVMCQQWQTGPLNETACDQCEF 681


>AF098999-3|AAC68726.2|  445|Caenorhabditis elegans Hypothetical
           protein W04C9.3 protein.
          Length = 445

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 197 GVAVLYTSHLKKLLRNWRRPIPVPRGAGISR 289
           G+   + SH+ K  ++   PIPVP G  +S+
Sbjct: 414 GMVCFFGSHMLKKTQDCEMPIPVPEGYYLSK 444


>AC006794-1|AAK68504.1|  407|Caenorhabditis elegans Hypothetical
           protein Y50D4A.3 protein.
          Length = 407

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 444 KCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKV 316
           +CS E  T   G     ++       GY+G+ +G  HT+ CK+
Sbjct: 284 ECSGEDPTNPGGPGESRRIKAFKWFNGYFGSPVGPEHTLSCKM 326


>Z81454-2|CAB03804.2|  346|Caenorhabditis elegans Hypothetical
           protein B0391.4 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = -1

Query: 252 LRQFLRSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTSLLTCGGT 94
           LR+  + FF+ LV +  TP +++   P  I++   +  L   +P+ ++ C  T
Sbjct: 243 LRKHHKQFFKTLVLQITTPTIIL-FIPITIIIFLPLFHLDVSLPSGVMLCSFT 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,030,675
Number of Sequences: 27780
Number of extensions: 317313
Number of successful extensions: 906
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)