Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0194.Seq
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   2.1  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   2.1  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   2.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.7  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   4.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.4  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   6.4  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 218 WCTGLLHLSSWFNWHLGKFC*SHICCHCQDIC 123
           WC G  + SS  N  LG+F  +  CC   D+C
Sbjct: 36  WC-GHGNKSSGPN-ELGRFKHTDACCRTHDMC 65


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 218 WCTGLLHLSSWFNWHLGKFC*SHICCHCQDIC 123
           WC G  + SS  N  LG+F  +  CC   D+C
Sbjct: 41  WC-GHGNKSSGPN-ELGRFKHTDACCRTHDMC 70


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 218 WCTGLLHLSSWFNWHLGKFC*SHICCHCQDIC 123
           WC G  + SS  N  LG+F  +  CC   D+C
Sbjct: 41  WC-GHGNKSSGPN-ELGRFKHTDACCRTHDMC 70


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 467 TVILVWV*SAARKSPL 420
           T++LVW  SAA  SP+
Sbjct: 306 TILLVWAISAAIGSPI 321


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 324 CKVTGKCGSVTVRLIPAPRGT 262
           C + G CG +   +   P+GT
Sbjct: 75  CPICGACGDIAHTVKYCPKGT 95


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -1

Query: 138 LPRHMPTSL 112
           LP+H+PTSL
Sbjct: 379 LPKHLPTSL 387


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 230 KLLRNWRRP 256
           KL RNWR+P
Sbjct: 29  KLKRNWRKP 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,561
Number of Sequences: 438
Number of extensions: 3885
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)