Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0194.Seq
(558 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 173 9e-44
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 173 9e-44
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 173 9e-44
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 173 9e-44
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 173 9e-44
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 172 1e-43
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 48 6e-06
At5g55820.1 68418.m06956 expressed protein 29 2.1
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 3.7
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 4.9
At5g65165.1 68418.m08196 succinate dehydrogenase, iron-sulphur s... 27 8.5
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 27 8.5
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 173 bits (420), Expect = 9e-44
Identities = 76/84 (90%), Positives = 82/84 (97%)
Frame = -1
Query: 507 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 328
RTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 115 RTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 174
Query: 327 PCKVTGKCGSVTVRLIPAPRGTGI 256
PCKVTGKCGSVTVR++PAPRG+GI
Sbjct: 175 PCKVTGKCGSVTVRMVPAPRGSGI 198
Score = 65.3 bits (152), Expect = 3e-11
Identities = 29/63 (46%), Positives = 40/63 (63%)
Frame = -3
Query: 253 SAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSP 74
+A VPKK+LQ AG+ D +TS+RGST TLGNF +LTP+ W++ ++SP
Sbjct: 200 AARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSP 259
Query: 73 YSE 65
Y E
Sbjct: 260 YQE 262
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 173 bits (420), Expect = 9e-44
Identities = 76/84 (90%), Positives = 82/84 (97%)
Frame = -1
Query: 507 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 328
RTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 114 RTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 173
Query: 327 PCKVTGKCGSVTVRLIPAPRGTGI 256
PCKVTGKCGSVTVR++PAPRG+GI
Sbjct: 174 PCKVTGKCGSVTVRMVPAPRGSGI 197
Score = 65.3 bits (152), Expect = 3e-11
Identities = 29/63 (46%), Positives = 40/63 (63%)
Frame = -3
Query: 253 SAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSP 74
+A VPKK+LQ AG+ D +TS+RGST TLGNF +LTP+ W++ ++SP
Sbjct: 199 AARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSP 258
Query: 73 YSE 65
Y E
Sbjct: 259 YQE 261
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 173 bits (420), Expect = 9e-44
Identities = 76/84 (90%), Positives = 82/84 (97%)
Frame = -1
Query: 507 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 328
RTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 114 RTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 173
Query: 327 PCKVTGKCGSVTVRLIPAPRGTGI 256
PCKVTGKCGSVTVR++PAPRG+GI
Sbjct: 174 PCKVTGKCGSVTVRMVPAPRGSGI 197
Score = 65.3 bits (152), Expect = 3e-11
Identities = 29/63 (46%), Positives = 40/63 (63%)
Frame = -3
Query: 253 SAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSP 74
+A VPKK+LQ AG+ D +TS+RGST TLGNF +LTP+ W++ ++SP
Sbjct: 199 AARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSP 258
Query: 73 YSE 65
Y E
Sbjct: 259 YQE 261
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 173 bits (420), Expect = 9e-44
Identities = 76/84 (90%), Positives = 82/84 (97%)
Frame = -1
Query: 507 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 328
RTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 114 RTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 173
Query: 327 PCKVTGKCGSVTVRLIPAPRGTGI 256
PCKVTGKCGSVTVR++PAPRG+GI
Sbjct: 174 PCKVTGKCGSVTVRMVPAPRGSGI 197
Score = 65.3 bits (152), Expect = 3e-11
Identities = 29/63 (46%), Positives = 40/63 (63%)
Frame = -3
Query: 253 SAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSP 74
+A VPKK+LQ AG+ D +TS+RGST TLGNF +LTP+ W++ ++SP
Sbjct: 199 AARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSP 258
Query: 73 YSE 65
Y E
Sbjct: 259 YQE 261
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 173 bits (420), Expect = 9e-44
Identities = 76/84 (90%), Positives = 82/84 (97%)
Frame = -1
Query: 507 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 328
RTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIGKPHTV
Sbjct: 114 RTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTV 173
Query: 327 PCKVTGKCGSVTVRLIPAPRGTGI 256
PCKVTGKCGSVTVR++PAPRG+GI
Sbjct: 174 PCKVTGKCGSVTVRMVPAPRGSGI 197
Score = 65.3 bits (152), Expect = 3e-11
Identities = 29/63 (46%), Positives = 40/63 (63%)
Frame = -3
Query: 253 SAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSP 74
+A VPKK+LQ AG+ D +TS+RGST TLGNF +LTP+ W++ ++SP
Sbjct: 199 AARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSP 258
Query: 73 YSE 65
Y E
Sbjct: 259 YQE 261
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 172 bits (419), Expect = 1e-43
Identities = 74/84 (88%), Positives = 83/84 (98%)
Frame = -1
Query: 507 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTV 328
RTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWGNKIGKPHTV
Sbjct: 106 RTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTV 165
Query: 327 PCKVTGKCGSVTVRLIPAPRGTGI 256
PCKVTGKCGSVTVR++PAPRG+GI
Sbjct: 166 PCKVTGKCGSVTVRMVPAPRGSGI 189
Score = 66.5 bits (155), Expect = 1e-11
Identities = 30/63 (47%), Positives = 40/63 (63%)
Frame = -3
Query: 253 SAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSP 74
+A VPKK+LQ AG+ D +TS+RGST TLGNF +LTP+ W++ +KSP
Sbjct: 191 AARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSKSP 250
Query: 73 YSE 65
Y E
Sbjct: 251 YQE 253
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.6 bits (108), Expect = 6e-06
Identities = 27/82 (32%), Positives = 45/82 (54%)
Frame = -1
Query: 501 RFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPC 322
+F+A V +GD G++G+G +KEV A++ + I A+ +++ V + K T P
Sbjct: 168 KFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQV-------PMTKYSTFPH 220
Query: 321 KVTGKCGSVTVRLIPAPRGTGI 256
+ G G+ V L PA GTG+
Sbjct: 221 RSEGDYGAAKVMLRPASPGTGV 242
>At5g55820.1 68418.m06956 expressed protein
Length = 1826
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 199 CSSPVHQPSEEAS*ELAQTNSSTTRGRNQPDCYRTT 306
CSSP H ++ L T+ ++G P C TT
Sbjct: 214 CSSPEHSKNQRVETNLDATSPGCSQGEKVPKCVSTT 249
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 492 AFVAIGDNNGHIGLGVKCSKE 430
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -1
Query: 336 HTVPCKVTGKCGSVTVRL 283
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At5g65165.1 68418.m08196 succinate dehydrogenase, iron-sulphur
subunit, mitochondrial (SDH2-3) nearly identical to
mitochondrial succinate dehydrogenase iron-sulphur
subunit (sdh2-3) [gi:12049602] from Arabidopsis thaliana
Length = 309
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -3
Query: 331 RPLQGHRQVWFCNSPADSCPSWYWN-WSAPVPKKLLQ 224
+ L G + C SCPS++WN P P LLQ
Sbjct: 204 KKLDGLYECILCACCTTSCPSYWWNPEEFPGPAALLQ 240
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 343 SDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAAL 444
+D ++P+ SSN + L K SAS+ +G LA L
Sbjct: 404 TDALSPLDSSNLSHVTLPKSKSASSENGSMLAPL 437
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,365,378
Number of Sequences: 28952
Number of extensions: 302475
Number of successful extensions: 799
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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