Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0180.Seq
(269 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 0.80
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 25 2.5
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 23 5.7
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 23 5.7
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 23 5.7
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 23 9.9
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 23 9.9
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 23 9.9
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 23 9.9
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 23 9.9
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 23 9.9
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 23 9.9
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 0.80
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 127 DSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCS 237
D+E K PVD PSD S DD S P + + S
Sbjct: 284 DNEDEKKPPVDTPSDEAINSDLDDPDSDEAPETEEGS 320
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 24.6 bits (51), Expect = 2.5
Identities = 10/46 (21%), Positives = 25/46 (54%)
Frame = -3
Query: 174 VIRRTVHGALV*YLAVRTRRLRDVVSRICFSDDEPRCSQYDXTKTS 37
++RR HG + ++ + +++ S+I + ++P C +D + S
Sbjct: 282 IVRRNPHGKEIRFITNLSEEEKNMASKISIAFEQPVCG-FDLLRVS 326
>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 475
Score = 23.4 bits (48), Expect = 5.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 106 VTEPPCADSEILDKCPVDCPSDYCPTSRCD 195
+ EP D+E + KC VD P S+ D
Sbjct: 248 IEEPKSQDAEDIIKCKVDFLKSLHPVSKED 277
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 23.4 bits (48), Expect = 5.7
Identities = 6/18 (33%), Positives = 15/18 (83%)
Frame = +3
Query: 114 ASLCGQRDIRQVPRGLSF 167
A++CG +D+ ++ RG+++
Sbjct: 90 ANVCGYKDVIRIERGIAY 107
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 23.4 bits (48), Expect = 5.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 193 RIGSLDSNQKDSPRGTCLISRCPHKEAP 110
+IGSLDS Q S + + K+ P
Sbjct: 323 KIGSLDSKQPSSTKSVAEVKVADEKQLP 350
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 22.6 bits (46), Expect = 9.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 79 VAKADATDDVTEPPCADSEILDKCPVDCPSD 171
+A+ D++ D+T PP +EI+ + +D SD
Sbjct: 267 IAEQDSSQDITMPP---NEIIAEESLDSGSD 294
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 22.6 bits (46), Expect = 9.9
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +1
Query: 106 VTEPPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPK 216
V PP + EI+ P D PT+ D + P+
Sbjct: 461 VPPPPESTVEIVSNAPTLAMEDVQPTAASDTMALAPQ 497
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 22.6 bits (46), Expect = 9.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 238 LNSRRSQASDSLTGHRIGSLDSNQKDSPRG 149
L R+ + + + HRIG S++KD G
Sbjct: 358 LKPRKKRQESTSSVHRIGKESSDRKDGISG 387
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 22.6 bits (46), Expect = 9.9
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +3
Query: 132 RDIRQVPRGLSF*LLSNEPMR 194
+D ++P GL+F ++S EP++
Sbjct: 543 KDPYRIPSGLNFEIVSFEPLK 563
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 22.6 bits (46), Expect = 9.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 62 LQRGSSSLKQMRLTTSRSLLVRTAR 136
LQR S+SLKQ+ LL +T++
Sbjct: 906 LQRESASLKQINNELESELLEKTSK 930
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 22.6 bits (46), Expect = 9.9
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 205 LTGHRIGSLDSNQKDSPRGTCL-ISRC 128
+TG + +L + DS + CL I+RC
Sbjct: 653 MTGSQFDALSDEEVDSLKALCLVIARC 679
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 22.6 bits (46), Expect = 9.9
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -1
Query: 266 VVESHLQAGAEQSALAGFGQLDWSSHRLVGQ 174
+ ES G+ + G+GQ W S LV Q
Sbjct: 1164 IPESDPLQGSSKDLHTGYGQSKWVSEYLVRQ 1194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 962,624
Number of Sequences: 5004
Number of extensions: 14672
Number of successful extensions: 44
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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