Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0180.Seq
(269 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0673 + 23394027-23394094,23394267-23394539,23394613-233949... 29 0.67
05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,675... 27 1.6
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 27 1.6
09_02_0352 + 7698775-7698821,7699054-7699130,7699654-7701122 27 2.1
01_01_0353 - 2802779-2802794,2802901-2802962,2803458-2803844 27 2.1
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502... 27 2.7
06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645... 27 2.7
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391... 27 2.7
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 27 2.7
11_06_0671 + 26099292-26099491,26099589-26099622,26104787-261048... 26 3.6
06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549... 26 3.6
06_03_0227 - 18425790-18425890,18426046-18426114,18426296-18426533 26 3.6
06_03_0222 - 18378892-18378992,18379106-18379174,18379356-18379593 26 3.6
03_05_0582 + 25823862-25824459,25824915-25825063,25825691-258259... 26 3.6
01_01_0750 + 5798607-5800142 26 3.6
08_01_1068 + 10899965-10900129,10900408-10900562,10900688-109009... 26 4.7
05_07_0226 - 28515052-28515064,28515426-28515502,28515610-285157... 26 4.7
05_03_0201 - 9762563-9762843,9763037-9763919,9763988-9764036,980... 26 4.7
03_04_0205 - 18485933-18488446 26 4.7
03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459 26 4.7
07_01_0678 - 5103836-5104613,5104697-5104888,5104994-5105036,510... 25 6.3
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873... 25 6.3
03_05_0431 + 24221881-24224586 25 6.3
02_03_0106 + 15292869-15296138 25 6.3
>06_03_0673 +
23394027-23394094,23394267-23394539,23394613-23394958,
23395031-23395168,23395260-23395385,23395464-23395652,
23395723-23396202,23396274-23397236
Length = 860
Score = 28.7 bits (61), Expect = 0.67
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 127 DSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAPA 246
D E + PV+CP +S D P+P S+ S P+
Sbjct: 2 DGESPEIMPVECPDPEPASSESGDDHDIPEPLSSRLSVPS 41
>05_02_0115 -
6758540-6758771,6759417-6759524,6759670-6759840,
6759967-6760077,6760562-6760663,6761139-6761366,
6761568-6761696,6761753-6761869,6761955-6762301,
6762377-6762931,6763104-6763182,6763429-6763595,
6763857-6764075,6764956-6765139,6765175-6765371,
6765717-6766035,6766379-6766538,6767642-6767794,
6767911-6768013
Length = 1226
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 100 DDVTEPPCADSEILDKCPVDCPSDYCPTS-RCDDQSSCP-KPASAD 231
D V EPP + E + +D P + TS D S C +P+ AD
Sbjct: 580 DSVAEPPLTEQEKVVSNGMDAPDELAGTSVNLDSTSHCEGEPSRAD 625
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Frame = +1
Query: 148 CPVDC--PSDYCPTSRCDDQSSCPKPASADCSAP 243
CP C P + P C D+ CP P C P
Sbjct: 109 CPCSCSTPCSFPPIG-CHDRGICPPPCPPPCPLP 141
>09_02_0352 + 7698775-7698821,7699054-7699130,7699654-7701122
Length = 530
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -3
Query: 186 ARWTVIRRTVHGALV*YLAVRTRRLRDVVSRICFSDDEPRCSQYDXTKTSHFNEMFV 16
A+WT +RR + R LR + I +DE R D KT N+MFV
Sbjct: 115 AKWTALRRVLPDDG----EQRASTLRRCLEAIAGVEDEARSYYEDGAKTWRENQMFV 167
>01_01_0353 - 2802779-2802794,2802901-2802962,2803458-2803844
Length = 154
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 52 IVLTAAWLVVAKADATDDVTEPPCADSEILDKCPVDCPSD 171
+V TA W A DD E ++ +LDKC V +D
Sbjct: 101 VVSTALWFTKAVGVWEDDDDEDDSDEATMLDKCSVKVYTD 140
>07_03_1575 -
27848977-27849095,27849254-27849302,27850270-27850287,
27850798-27851786,27852119-27852733,27852893-27852921,
27853990-27854453,27854530-27854654,27854743-27855025,
27855112-27856102,27856965-27857576,27857666-27858630
Length = 1752
Score = 26.6 bits (56), Expect = 2.7
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +2
Query: 35 WDVFVXSY*LQRGSSSLKQMRLTTSRSLLVRTARY*TSAPWTVLLITVQRADAMTSQAVR 214
W +++ Y L RGS M+LT + L+ T Y A + L+ D + +A+R
Sbjct: 334 WPIYLAEYLLTRGSELRYGMKLTDLK--LLNTEYYTQPAMVKLELLRALCDDVLEIEAIR 391
Query: 215 S 217
S
Sbjct: 392 S 392
>06_02_0064 +
11062798-11063568,11064212-11064261,11064354-11064510,
11064598-11064816,11065301-11065429,11066502-11068031,
11068654-11069013,11069086-11069205,11069727-11069897,
11070022-11070180,11070327-11070452,11070660-11070968
Length = 1366
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -3
Query: 87 FSDDEPRCSQYDXTKTSHFNEMF 19
F +EPR SQ D TKTS MF
Sbjct: 737 FGKEEPRGSQGDGTKTSDPRPMF 759
>04_04_1120 +
31037811-31038813,31038903-31038991,31039094-31039163,
31039270-31039353,31039452-31039528,31039631-31039712,
31039847-31039929,31040270-31040333,31040435-31040566,
31040674-31040777,31040901-31040996,31041144-31041251
Length = 663
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +1
Query: 100 DDVTEPPCADSEILD-KCPVDCPSDYCPTSRCDDQSSCPKPASADCSAPACK 252
D T C+DS++ KCP D C+D C + + C +CK
Sbjct: 488 DGKTFSACSDSDLSGCKCPPGFKGDGL---HCEDVDECSEKLACSCPHCSCK 536
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = +1
Query: 115 PPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAP 243
PPC +K P DC C C+ PKP C P
Sbjct: 87 PPCKPPPC-EKPPEDCKPKPCHCCSCEKPK--PKPKPCHCEKP 126
>11_06_0671 +
26099292-26099491,26099589-26099622,26104787-26104813,
26105557-26105642,26105735-26105783,26105969-26106018,
26106692-26107185,26107379-26107539,26107808-26108017,
26108100-26108292,26108367-26108444,26108555-26108649,
26109158-26109280
Length = 599
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 248 QAGAEQSALAGFGQLDWSSHRLVGQ*SEGQSTGHLSNISL 129
+AGA GF ++D +GQ SEG S+G + I L
Sbjct: 532 RAGAVAQIYGGFSEVDIPIGCYIGQTSEGTSSGGNALIGL 571
>06_03_1359 +
29554078-29554375,29554470-29554655,29554768-29554923,
29555557-29555694,29555789-29555909,29556339-29556345
Length = 301
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 160 CPSDYCPTSRCDDQSSCPKPASADCSAP 243
CP+ P RC D P PA+A P
Sbjct: 11 CPNAANPFHRCADYCPVPAPAAATAKPP 38
>06_03_0227 - 18425790-18425890,18426046-18426114,18426296-18426533
Length = 135
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 115 PPCADSEILDKCPVDCPSDYCPT 183
P +SE++D C + C S C T
Sbjct: 77 PEAEESEVVDFCKLGCASSVCST 99
>06_03_0222 - 18378892-18378992,18379106-18379174,18379356-18379593
Length = 135
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 115 PPCADSEILDKCPVDCPSDYCPT 183
P +SE++D C + C S C T
Sbjct: 77 PEAEESEVVDFCKLGCASSVCST 99
>03_05_0582 +
25823862-25824459,25824915-25825063,25825691-25825960,
25826031-25826161,25826545-25826662,25826737-25826829,
25826987-25827064,25827158-25827224,25828780-25829111
Length = 611
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 52 IVLTAAWLVVAKADATDDVTEPPCADSEILDKCPVDCPSD 171
I+LT+AW++ K D + +++++ + P D SD
Sbjct: 222 IILTSAWIICTKKPFDDWSYKDYAPEAKVIVRIPDDTASD 261
>01_01_0750 + 5798607-5800142
Length = 511
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 128 TARY*TSAPWTVLLITVQRADAMTSQAVRSLRAPTVQRQPANE 256
TAR+ ++AP V++ T++ A A AVR ++ + E
Sbjct: 402 TARFVSAAPVEVIVATLEAAAAAAGMAVREREDGSISMEGTRE 444
>08_01_1068 +
10899965-10900129,10900408-10900562,10900688-10900996,
10901870-10901939,10902504-10902802,10904305-10904724,
10906063-10906324
Length = 559
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +1
Query: 172 YCPTSRCDDQSSCPKPASADCSAP 243
Y PT D S P+P C++P
Sbjct: 508 YTPTELSDSGSGTPEPGDGGCASP 531
>05_07_0226 -
28515052-28515064,28515426-28515502,28515610-28515767,
28515852-28515937,28516048-28516351,28516410-28517490
Length = 572
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Frame = -2
Query: 256 LICRLALNSRRSQAS-----DSLTGHRIGSLDSNQKDSPRG-TCLISRCPHKEAP 110
++CR +++ R + A+ +LTG I S+ S++ +PRG T ++ P + P
Sbjct: 210 VVCRSSVSRRSAAAAATPRASNLTGVEIYSISSSRNATPRGSTFTLADIPGHQPP 264
>05_03_0201 -
9762563-9762843,9763037-9763919,9763988-9764036,
9806710-9807680
Length = 727
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 148 CPVDCPSDYCPTSR 189
C D PSD CPTSR
Sbjct: 213 CEEDHPSDRCPTSR 226
>03_04_0205 - 18485933-18488446
Length = 837
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 269 SVVESHLQAGAEQSALAGFGQLDWSSHRL 183
++V++H Q G ++A A F +L W H +
Sbjct: 132 TLVQAHAQRGDFEAAAALFRRLRWEGHEV 160
>03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459
Length = 341
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Frame = +1
Query: 58 LTAAWLVVAKADATDDVTEPPCADSEILDKCPVDCPSDYCPTSRCDDQSSC-----PKPA 222
+ AA AK A + C SE++ CP+ R + + +PA
Sbjct: 36 IAAAAAAAAKRPAESSTSASSCFHSEVISATSTTCPTSLAAAQRPEKRPRYQDVDEEQPA 95
Query: 223 SADCS 237
+++CS
Sbjct: 96 ASECS 100
>07_01_0678 -
5103836-5104613,5104697-5104888,5104994-5105036,
5105712-5105835,5105924-5106016,5106754-5106931,
5107032-5107138,5108098-5108179,5108277-5108314,
5108409-5108495,5109025-5109135,5109282-5109773
Length = 774
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 178 PTSRCDDQSSCPKPASADCSAPA 246
P D +S+ P P+SAD AP+
Sbjct: 22 PPPHADPRSAPPMPSSADADAPS 44
>06_01_1069 +
8731567-8731632,8732120-8732281,8733028-8733081,
8733557-8733630,8733706-8733786,8734902-8735079,
8735336-8735506,8736113-8736202,8736284-8736331,
8736447-8736562,8736655-8736733,8737101-8737223
Length = 413
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 164 LLITVQRADAMTSQAVRSLRAPTVQRQPANEI 259
L+I + +A A +S A + +AP Q QPA +
Sbjct: 70 LVIMLSKAKASSSGASTASKAPVSQSQPATPV 101
>03_05_0431 + 24221881-24224586
Length = 901
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Frame = +1
Query: 124 ADSEILDKCPVDCPSDYCPTSRCDD------QSSCPKPASADC 234
A+S + C V CP D +S C+ Q C K AS +C
Sbjct: 359 ANSRLCLPCSVGCPDDSYESSPCNATADRVCQFDCSKCASDEC 401
>02_03_0106 + 15292869-15296138
Length = 1089
Score = 25.4 bits (53), Expect = 6.3
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +1
Query: 67 AWLVVAKADA---TDDVTEPPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASA 228
AW+ K DA TDDV + + K + S P +RC SC KPASA
Sbjct: 64 AWVAQVK-DAMYETDDVLDVSMVEG---GKMLAEGDSPPTPKARCSLMFSCFKPASA 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,811,507
Number of Sequences: 37544
Number of extensions: 118545
Number of successful extensions: 402
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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