Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0180.Seq
(269 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.25
SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.78
SB_6520| Best HMM Match : MANEC (HMM E-Value=2.2e-12) 29 0.78
SB_3300| Best HMM Match : Activin_recp (HMM E-Value=0.15) 29 0.78
SB_1496| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.0
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11) 28 1.4
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38) 27 1.8
SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083) 27 2.4
SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_55021| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-45) 27 2.4
SB_22383| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.59) 27 2.4
SB_8425| Best HMM Match : EGF (HMM E-Value=0) 27 2.4
SB_1289| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3) 27 3.1
SB_13863| Best HMM Match : CXC (HMM E-Value=0.13) 27 3.1
SB_9022| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 26 5.5
SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.5
SB_56118| Best HMM Match : RBM1CTR (HMM E-Value=6.1) 26 5.5
SB_52987| Best HMM Match : RBM1CTR (HMM E-Value=7) 26 5.5
SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014) 26 5.5
SB_37869| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.5
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 26 5.5
SB_4858| Best HMM Match : RnaseH (HMM E-Value=1.1) 26 5.5
SB_59606| Best HMM Match : rve (HMM E-Value=0.00032) 26 5.5
SB_48400| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.5
SB_45486| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.5
SB_37802| Best HMM Match : RnaseH (HMM E-Value=0.69) 26 5.5
SB_9972| Best HMM Match : rve (HMM E-Value=0.16) 26 5.5
SB_4440| Best HMM Match : RBM1CTR (HMM E-Value=6.1) 26 5.5
SB_41743| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10) 25 7.2
SB_25856| Best HMM Match : Myb_DNA-binding (HMM E-Value=1.4) 25 7.2
SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_54691| Best HMM Match : SWIRM (HMM E-Value=0.0033) 25 9.5
SB_48832| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012) 25 9.5
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) 25 9.5
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19) 25 9.5
SB_4149| Best HMM Match : VWA (HMM E-Value=0) 25 9.5
SB_57323| Best HMM Match : ShTK (HMM E-Value=0) 25 9.5
SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10) 25 9.5
SB_37010| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_30297| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 30.3 bits (65), Expect = 0.25
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 133 EILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAPACK 252
E + CP C CP C D + CP A+C+ ACK
Sbjct: 1719 ECKESCPKVCGPG-CPVQCCSDLNICP----ANCTGSACK 1753
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = +1
Query: 106 VTEPPCADSEILDKCPVDCPSDY---CPTSRCDDQSS-CPKPASADCSAPAC 249
V +P + E CP C + CP C + S+ CP+ S D P+C
Sbjct: 1273 VLKPIQENREHSQSCPKICFTSCKPSCPVHCCSEHSNACPQECSTDNCKPSC 1324
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +1
Query: 121 CADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAPAC 249
C +E L CP C D C R + C +CSA +C
Sbjct: 1660 CCTTEPLSACPATCSPDSC---RPECPLICCSVCPPNCSAQSC 1699
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +1
Query: 148 CPVDCPSDYCPTSRCDD-QSSCPKPASADCSAPACK 252
C C D CP C SSCP ADCS CK
Sbjct: 1557 CLTSCKPD-CPIKCCTKLSSSCP----ADCSPQNCK 1587
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 8/51 (15%)
Frame = +1
Query: 130 SEILDKCPVDCPSDY----CPTSRC----DDQSSCPKPASADCSAPACK*D 258
S L CP C D+ CPT C + Q S + CS C D
Sbjct: 1364 SNALSSCPQSCSGDHCGAECPTQCCLLADNGQHSSTASCPSACSPSGCNPD 1414
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = +1
Query: 106 VTEPPCADSEILDKCPVDCPSDYCPTSRCDD-QSSCPKPASADCSAPAC 249
V P C+ + CP C + R + + SCPK C C
Sbjct: 1689 VCPPNCSAQSCGNFCPPKCCTSQLSKDRQKECKESCPKVCGPGCPVQCC 1737
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/49 (30%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Frame = +1
Query: 121 CADSEILDKCPVDCPSDYCPT------SRCDDQSSCPKPASADCSAPAC 249
C D C CPS+ C T Q CP S C P C
Sbjct: 1311 CPQECSTDNCKPSCPSECCLTVLTPLKENKSHQEGCPAVCSESCK-PDC 1358
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Frame = +1
Query: 121 CADSEILDKCPVDCPSDYC---PTSRCDDQSSCPKPASADCSAPAC 249
C S D C +CP+ C + +SCP S P C
Sbjct: 1370 CPQSCSGDHCGAECPTQCCLLADNGQHSSTASCPSACSPSGCNPDC 1415
>SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 28.7 bits (61), Expect = 0.78
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 64 AAWLVVAKADATDD-VTEPPCADSEILDKCPVDCPSDYCPTSRCDDQ 201
A W +V TDD + + +DS D P+DC S+ SR + +
Sbjct: 446 ATWQIVGDIPQTDDDIRDGEPSDSATEDVAPLDCASEEEEESRSESK 492
>SB_6520| Best HMM Match : MANEC (HMM E-Value=2.2e-12)
Length = 452
Score = 28.7 bits (61), Expect = 0.78
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 142 DKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAPAC 249
+ CP P+ C ++ C D +SCP A C C
Sbjct: 158 EDCPPGAPTAMCSSNPC-DVASCPGHPYASCKPSFC 192
>SB_3300| Best HMM Match : Activin_recp (HMM E-Value=0.15)
Length = 281
Score = 28.7 bits (61), Expect = 0.78
Identities = 12/49 (24%), Positives = 18/49 (36%)
Frame = +1
Query: 100 DDVTEPPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAPA 246
D + C ++ D V PT D+ +SC P + C A
Sbjct: 11 DSIWPTGCCHGDMFDNGTVPARDSLWPTGSRDEPASCENPVTRSCGVDA 59
>SB_1496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 28.3 bits (60), Expect = 1.0
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +1
Query: 43 FCXIVLTAAWLVVAKADATDDVTEPPCADSEILDKCPVD-CPSDYCPTSRCDDQSSCPKP 219
+C VL A V A DV C D ++ V C S CP C +SCP P
Sbjct: 439 YCQDVLVAHCQDVLVAHC-QDVLVAYCQDVLVVYCQDVPGCAS--CPPPGC---ASCPLP 492
Query: 220 ASADCSAPAC 249
A C P C
Sbjct: 493 GCASCQPPGC 502
>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
Length = 1012
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +1
Query: 91 DATDDVTEPPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASAD 231
D+ D T PPC DS+ P C SD+ TS CD + P ++D
Sbjct: 317 DSDRDQT-PPC-DSDHDQTSP--CDSDHDQTSPCDSDHNQTSPRNSD 359
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Frame = +1
Query: 91 DATDDVTEPPCADSEILDKCPVD------CPSDYCPTSRCDDQSSCPKPASAD 231
D+ D T P +D + C D C SD+ TS CD + P ++D
Sbjct: 527 DSDHDQTSPCDSDHDQTSPCDSDHDQTSPCDSDHDQTSPCDSDHNQTSPRNSD 579
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +1
Query: 91 DATDDVTEPPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASAD 231
D+ D T P DS++ P C SD TS CD P +D
Sbjct: 224 DSDHDQTSP--CDSDLDQTSP--CDSDLDQTSPCDSDHDQTSPCDSD 266
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Frame = +1
Query: 91 DATDDVTEPPCADSEILDKCPVD------CPSDYCPTSRCD---DQSSCPKPASADCSAP 243
D+ + T P +D + C D C SD+ TS CD DQ+S P+ + D ++P
Sbjct: 347 DSDHNQTSPRNSDHDQTSPCDSDHDQTSPCDSDHDQTSPCDSDHDQTS-PRDSDHDQTSP 405
>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
Length = 667
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +1
Query: 121 CADSEILDKCPV--DCPSDY-CPTSRCDDQSSCPKPASADCS 237
C DS+ +DKC DC + C C PKP A+ S
Sbjct: 487 CLDSDAIDKCQTDRDCQDQFKCCFDGCRYNCILPKPDPAEHS 528
>SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083)
Length = 337
Score = 27.1 bits (57), Expect = 2.4
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Frame = +1
Query: 88 ADATDDVTEPPCA-DSEILDKCPVDCPSDYCPTSRCDDQS-SCPKPASA----DCSAP-- 243
A +D + PP A +S+ + PV C SD P+S +S P P A D +P
Sbjct: 82 AYGSDGIPSPPVACESDGIPSSPVACESDGIPSSLVACESDGIPSPLVACKFDDIPSPPV 141
Query: 244 ACK*D 258
ACK D
Sbjct: 142 ACKFD 146
>SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1586
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 115 PPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAP 243
PP +D++ + +D S +CP++ DD +S P+ +S + P
Sbjct: 1533 PPQSDADASETRAMD--SSHCPSNLQDDDTSPPRRSSRERHLP 1573
>SB_55021| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-45)
Length = 348
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Frame = +1
Query: 145 KCPVDCPSDYC---PTSRCDDQSSCPKPASADCSAPA 246
KC +CPS T C+D+ C P DCS A
Sbjct: 135 KC--ECPSGMSYNHGTGTCEDKDECASPDENDCSPDA 169
>SB_22383| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.59)
Length = 810
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 115 PPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAP 243
PP +D++ + +D S +CP++ DD +S P+ +S + P
Sbjct: 757 PPQSDADASETRAMD--SSHCPSNLQDDDTSPPRRSSRERHLP 797
>SB_8425| Best HMM Match : EGF (HMM E-Value=0)
Length = 1955
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +1
Query: 121 CADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPAS 225
C D KC CPS Y RC+ S CP P S
Sbjct: 1119 CVDLPNEFKCV--CPSGY-EGRRCEHASGCPSPKS 1150
>SB_1289| Best HMM Match : Ribosomal_L27 (HMM E-Value=7.3)
Length = 405
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 115 PPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAP 243
PP +D++ + +D S +CP++ DD +S P+ ++ + P
Sbjct: 352 PPQSDADASETRAMD--SSHCPSNLQDDDTSLPRRSTRERHLP 392
>SB_13863| Best HMM Match : CXC (HMM E-Value=0.13)
Length = 80
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Frame = +1
Query: 121 CADSEILDKCP-----VDCPSDYCPTSRCDDQSSC 210
C+ +L CP + C SD C CD+Q+SC
Sbjct: 27 CSRKRVLPSCPCLSNGLKC-SDMCKLIDCDNQASC 60
>SB_9022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 612
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 190 CDDQSSCPKPASADC 234
CD + CP+PA DC
Sbjct: 43 CDPATGCPQPAGNDC 57
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +1
Query: 118 PCADSEILDKCPV-DCPSDYCPTSRCDDQSSCPKPASADCSA 240
P +EI D P+ Y SRC + KP S+ CSA
Sbjct: 463 PSTKTEISDSRRAWPAPAQYYADSRCVSWTQDSKPPSSACSA 504
>SB_56215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1505
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 115 PPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAP 243
PP +D++ + +D S +CP++ DD +S P+ ++ + P
Sbjct: 1452 PPQSDADASETRAMD--SSHCPSNLQDDDTSPPRRSTRERHLP 1492
>SB_56118| Best HMM Match : RBM1CTR (HMM E-Value=6.1)
Length = 71
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 115 PPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAP 243
PP +D++ + +D S +CP++ DD +S P+ ++ + P
Sbjct: 18 PPQSDADASETRAMD--SSHCPSNLQDDDTSPPRRSTRERHLP 58
>SB_52987| Best HMM Match : RBM1CTR (HMM E-Value=7)
Length = 247
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 115 PPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAP 243
PP +D++ + +D S +CP++ DD +S P+ ++ + P
Sbjct: 194 PPQSDADASETKAMD--SSHCPSNLQDDDTSPPRRSTRERHLP 234
>SB_40863| Best HMM Match : RVT_1 (HMM E-Value=0.00014)
Length = 1236
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 115 PPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAP 243
PP +D++ + +D S +CP++ DD +S P+ ++ + P
Sbjct: 1183 PPQSDADASETRAMD--SSHCPSNLQDDDTSPPRRSTRERHLP 1223
>SB_37869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 115 PPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAP 243
PP +D++ + +D S +CP++ DD +S P+ ++ + P
Sbjct: 32 PPQSDADASETRAMD--SSHCPSNLQDDDTSPPRRSTRERHLP 72
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 151 PVDCPSDYCPTSRCDDQSSCPKPASADCSAP 243
P PS + P+S ++ P P +A SAP
Sbjct: 561 PAPPPSVFAPSSAVPTPATAPPPVAATLSAP 591
>SB_4858| Best HMM Match : RnaseH (HMM E-Value=1.1)
Length = 512
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 115 PPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAP 243
PP +D++ + +D S +CP++ DD +S P+ ++ + P
Sbjct: 459 PPQSDADASETRAMD--SSHCPSNLQDDDTSPPRRSTRERHLP 499
>SB_59606| Best HMM Match : rve (HMM E-Value=0.00032)
Length = 404
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 115 PPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAP 243
PP +D++ + +D S +CP++ DD +S P+ ++ + P
Sbjct: 351 PPQSDADASETRAMD--SSHCPSNLQDDDTSPPRRSTRERHLP 391
>SB_48400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 115 PPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAP 243
PP +D++ + +D S +CP++ DD +S P+ ++ + P
Sbjct: 109 PPQSDADASETKAMD--SSHCPSNLQDDDTSPPRRSTRERHLP 149
>SB_45486| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 115 PPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAP 243
PP +D++ + +D S +CP++ DD +S P+ ++ + P
Sbjct: 32 PPQSDADASETRAMD--SSHCPSNLQDDDTSPPRRSTRERHLP 72
>SB_37802| Best HMM Match : RnaseH (HMM E-Value=0.69)
Length = 756
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 115 PPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAP 243
PP +D++ + +D S +CP++ DD +S P+ ++ + P
Sbjct: 703 PPQSDADASETRAMD--SSHCPSNLQDDDTSPPRRSTRERHLP 743
>SB_9972| Best HMM Match : rve (HMM E-Value=0.16)
Length = 514
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 115 PPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAP 243
PP +D++ + +D S +CP++ DD +S P+ ++ + P
Sbjct: 461 PPQSDADASETRAMD--SSHCPSNLQDDDTSPPRRSTRERHLP 501
>SB_4440| Best HMM Match : RBM1CTR (HMM E-Value=6.1)
Length = 85
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 115 PPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAP 243
PP +D++ + +D S +CP++ DD +S P+ ++ + P
Sbjct: 32 PPQSDADASETRAMD--SSHCPSNLQDDDTSPPRRSTRERHLP 72
>SB_41743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1436
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 70 WLVVAKADATDD-VTEPPCADSEILDKCPVDCPSD 171
W ++ TDD + + +DS D P+DC S+
Sbjct: 1220 WQILGDIPKTDDDIRDGEPSDSATEDSAPLDCASE 1254
>SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)
Length = 1164
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 112 EPPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCS 237
E P A+ ++ CP+ CP C Q S P+ + CS
Sbjct: 1124 ENPEANDLMVQLATQTCPNQTCPRCTC-QQGSRPQCTCSPCS 1164
>SB_25856| Best HMM Match : Myb_DNA-binding (HMM E-Value=1.4)
Length = 296
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 183 RWTVIRRTVHGALV*YLAVRTRRLRD 106
+WT RT+ A+ YL +++RR+ +
Sbjct: 159 KWTTFHRTISEAVDLYLPLKSRRVHE 184
>SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1808
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 183 RWTVIRRTVHGALV*YLAVRTRRLRD 106
+WT RT+ A+ YL +++RR+ +
Sbjct: 1177 KWTTFHRTISEAVDLYLPLKSRRVHE 1202
>SB_54691| Best HMM Match : SWIRM (HMM E-Value=0.0033)
Length = 809
Score = 25.0 bits (52), Expect = 9.5
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -3
Query: 114 LRDVVSRICFSDDEPRC 64
++D++ R C+S+DE C
Sbjct: 326 IQDLLERYCYSEDEDHC 342
>SB_48832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 25.0 bits (52), Expect = 9.5
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -3
Query: 114 LRDVVSRICFSDDEPRC 64
++D++ R C+S+DE C
Sbjct: 52 IQDLLERYCYSEDEDHC 68
>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
Length = 1148
Score = 25.0 bits (52), Expect = 9.5
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -3
Query: 114 LRDVVSRICFSDDEPRC 64
++D++ R C+S+DE C
Sbjct: 253 IQDLLERYCYSEDEDHC 269
>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3922
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +1
Query: 115 PPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASAD 231
PP +D++ + +D S +CP++ DD +S P+ ++ +
Sbjct: 3758 PPQSDADASETRAMD--SSHCPSNLQDDDTSPPRRSTRE 3794
>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
Length = 3083
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/35 (31%), Positives = 13/35 (37%)
Frame = +1
Query: 148 CPVDCPSDYCPTSRCDDQSSCPKPASADCSAPACK 252
C V CP+ CPT + CS P K
Sbjct: 49 CQVSCPNGSCPTEPVLSDARLQCQGKLYCSLPLSK 83
>SB_4149| Best HMM Match : VWA (HMM E-Value=0)
Length = 1141
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 121 CADSEILDKCPVDCPSDYCPTSRCDDQ-SSCPKPASADCSAPACK*DSTT 267
C+ E V C D C +SRC+ +C PA + A + STT
Sbjct: 678 CSTDENCQSQDVACCYDSCGSSRCERAIKNCFVPAEIVFALDASESSSTT 727
>SB_57323| Best HMM Match : ShTK (HMM E-Value=0)
Length = 911
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = +1
Query: 85 KADATDDVTEPPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPK 216
KA T T+PP P P P + D S CPK
Sbjct: 774 KAPDTQPPTQPPVTQPPDTPVPPTQPPVTDAPANCKDTYSGCPK 817
>SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10)
Length = 1318
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +1
Query: 115 PPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASAD 231
PP +D++ + +D S +CP++ DD +S P+ ++ +
Sbjct: 314 PPQSDADASETRAMD--SSHCPSNLQDDDTSPPRRSTRE 350
>SB_37010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 651
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +1
Query: 115 PPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASAD 231
PP +D++ + +D S +CP++ DD +S P+ ++ +
Sbjct: 132 PPQSDADASETRAMD--SSHCPSNLQDDDTSPPRRSTRE 168
>SB_30297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +1
Query: 109 TEPPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPAS-ADCSA 240
T PP A I+ C D C T+RC + S K + CSA
Sbjct: 298 TSPP-APQVIIQLVKCKCAKDRCVTNRCQCKKSGLKCTNLCGCSA 341
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Frame = +1
Query: 85 KADATDDVTEPPCADSEILD------KCPVDCPSDYCPTSRCDDQ---SSCPKPASA 228
KAD D+V+ A ++ D KCP+ C +Y P D + + C ASA
Sbjct: 1268 KADPCDNVSCDYYAQCQVEDDGSTSCKCPIFCTYEYMPVCGTDGKTYGNKCEMRASA 1324
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,812,339
Number of Sequences: 59808
Number of extensions: 130542
Number of successful extensions: 458
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 16,821,457
effective HSP length: 66
effective length of database: 12,874,129
effective search space used: 296104967
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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