Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0180.Seq
         (269 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   3.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   4.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   4.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   6.2  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 20.6 bits (41), Expect = 3.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 59  NTIXQKRPISTRCLSVVFN 3
           N + +KRP  T   SVVF+
Sbjct: 103 NAVEEKRPELTNRKSVVFH 121


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 4.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 31  EMGRFCXIVLTAA 69
           E+G FC +V+ AA
Sbjct: 336 ELGLFCSVVVIAA 348


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 4.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 109 TEPPCADSEILDKC 150
           T PP  D + LDKC
Sbjct: 414 TSPPPEDWKPLDKC 427


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 19.8 bits (39), Expect = 6.2
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -3

Query: 69  RCSQYDXTKTSHFN 28
           RC+ +D    +H+N
Sbjct: 413 RCANFDNQDNNHYN 426


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,481
Number of Sequences: 438
Number of extensions: 848
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5138079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)