Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0180.Seq
(269 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g22140.1 68415.m02630 expressed protein ; expression supporte... 29 0.42
At3g27580.1 68416.m03446 protein kinase, putative similar to ser... 28 0.97
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica... 28 0.97
At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nea... 27 2.2
At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nea... 27 2.2
At5g01170.1 68418.m00021 glycine-rich protein predicted proteins... 26 3.0
At4g20110.1 68417.m02943 vacuolar sorting receptor, putative sim... 26 3.0
At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identica... 26 3.0
At2g47220.1 68415.m05897 3' exoribonuclease family domain 1 prot... 26 3.0
At2g34940.1 68415.m04289 vacuolar sorting receptor, putative sim... 26 3.0
At1g14080.1 68414.m01666 xyloglucan fucosyltransferase, putative... 26 3.9
At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein ... 25 5.2
At3g08770.1 68416.m01019 lipid transfer protein 6 (LTP6) identic... 25 5.2
At5g61865.1 68418.m07761 expressed protein 25 6.8
At3g53840.1 68416.m05948 protein kinase family protein contains ... 25 6.8
At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing pro... 25 6.8
At1g32190.1 68414.m03959 expressed protein 25 6.8
At4g34900.1 68417.m04949 xanthine dehydrogenase, putative simila... 25 9.0
At2g14720.2 68415.m01657 vacuolar sorting receptor, putative ide... 25 9.0
At2g14720.1 68415.m01656 vacuolar sorting receptor, putative ide... 25 9.0
>At2g22140.1 68415.m02630 expressed protein ; expression supported
by MPSS
Length = 506
Score = 29.1 bits (62), Expect = 0.42
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 250 CRLALNSRRSQASDSLTGHRIGSLDSNQKDSPR 152
C + S D +G RI SLDS +DSPR
Sbjct: 69 CSFGSRALASNREDKFSGKRIISLDSEFEDSPR 101
>At3g27580.1 68416.m03446 protein kinase, putative similar to
serine/threonine protein kinase [Arabidopsis thaliana]
gi|217861|dbj|BAA01715
Length = 578
Score = 27.9 bits (59), Expect = 0.97
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 166 SDYCPTSRCDDQSSCPKPASADCSAPAC 249
S YC C DQSSC DC P C
Sbjct: 351 SSYCIQPTCVDQSSC--IVQPDCIQPVC 376
>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P46100
Transcriptional regulator ATRX {Homo sapiens}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain;
non-consensus GC donor splice site at exon boundary
28614
Length = 1457
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 263 VESHLQAGAEQSALAGFGQLDWSS 192
+E L GA + +LAG +LDWSS
Sbjct: 235 LEKKLADGAVKESLAGTSELDWSS 258
>At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 121 CADSEILDKCPVDCPSDYCP--TSRCDDQSSCPKPASADCSAPACK 252
C D + + KC +CP + T +C+D + C + + C +CK
Sbjct: 493 CVDKDSV-KC--ECPPGFKGDGTKKCEDINECKEKKACQCPECSCK 535
>At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 121 CADSEILDKCPVDCPSDYCP--TSRCDDQSSCPKPASADCSAPACK 252
C D + + KC +CP + T +C+D + C + + C +CK
Sbjct: 493 CVDKDSV-KC--ECPPGFKGDGTKKCEDINECKEKKACQCPECSCK 535
>At5g01170.1 68418.m00021 glycine-rich protein predicted proteins,
Arabidopsis thaliana
Length = 568
Score = 26.2 bits (55), Expect = 3.0
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Frame = +1
Query: 82 AKADATDDVTEP--PCADSEILDKCPVDCPSDYCPTSRCD-----DQSSCPKPASADCSA 240
A A D++ P P S D P + S +CP+ CD D ++ P P+S+
Sbjct: 8 APVTAVDELAPPSQPHRLSTSCDLHPEERFSGFCPSCLCDRLSVLDHNAAPPPSSSSRKP 67
Query: 241 PA 246
P+
Sbjct: 68 PS 69
>At4g20110.1 68417.m02943 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222; identical to vacuolar sorting
receptor-like protein (GI:2827665) [Arabidopsis
thaliana]
Length = 625
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +1
Query: 88 ADATDDVTEPPCADSEILD-KCPVDCPSDYCPTSRCDDQSSCPKPASADCSAPACK 252
+D + +T C+DS KCP D C+D + C + + CS CK
Sbjct: 480 SDTRNGLTFSACSDSVSTGCKCPEGFQGDGLT---CEDINECKERSVCQCSGCRCK 532
>At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identical
to endo-polygalacturonase [Arabidopsis thaliana]
GI:2597824
Length = 431
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 145 KCPVDCPSDYCPTSRCDDQSS 207
K P+ DYC +C+DQ S
Sbjct: 346 KNPIIIDQDYCDKDKCEDQES 366
>At2g47220.1 68415.m05897 3' exoribonuclease family domain 1
protein-related similar to polynucleotide phosphorylase
[Pisum sativum] GI:2286200, polyribonucleotide
phophorylase [Spinacia oleracea] GI:1924972; contains
Pfam profiles PF05266: Protein of unknown function
(DUF724), weak hit to PF01138: 3' exoribonuclease
family, domain 1
Length = 469
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 262 LNLICRLALNSRRSQASDSLTGHRIGSLDSNQKDSP 155
LN++ LA S + + G+ SLDSN+ SP
Sbjct: 158 LNILSPLAQGSGNNMGGSVMNGNTPPSLDSNESVSP 193
>At2g34940.1 68415.m04289 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222
Length = 618
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 106 VTEPPCADSEILD-KCPVDCPSDYCPTSRCDDQSSCPKPASADCSAPACK 252
+T C+DSE +CP+ D +C+D C + ++ C CK
Sbjct: 484 LTFSSCSDSETSGCRCPLGFLGDGL---KCEDIDECKEKSACKCDGCKCK 530
>At1g14080.1 68414.m01666 xyloglucan fucosyltransferase, putative
(FUT6) nearly identical to SP|Q9XI80 Probable
fucosyltransferase 6 (EC 2.4.1.-) (AtFUT6) {Arabidopsis
thaliana}; similar to xyloglucan fucosyltransferase
GI:5231145 from (Arabidopsis thaliana)
Length = 519
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 70 WLVVAKADATDDVTEPPCADSEILDKCPVDCPSDYC 177
WL+ T +PPC S +D C + PS C
Sbjct: 454 WLLYQPTGPT--APDPPCIQSTSMDPCHLTPPSHGC 487
>At5g63280.1 68418.m07942 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 271
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 136 ILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCSAPA 246
+L+ C +D C CD S KP S C+ PA
Sbjct: 131 LLNTTDTKCLADLCGALHCDFVLSSKKPKS-KCNPPA 166
>At3g08770.1 68416.m01019 lipid transfer protein 6 (LTP6) identical
to GI:8571927
Length = 113
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 133 EILDKCPVDCPSDYCPTSRCD 195
E+ KC VD P + P++ CD
Sbjct: 90 ELPSKCGVDLPYKFSPSTDCD 110
>At5g61865.1 68418.m07761 expressed protein
Length = 417
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 232 SRRSQASDSLTGHRIGSLDSNQKDSPRGTCLISRCPHKEAP 110
S++ QA S+TG RIG+ S + + L+S+ ++ P
Sbjct: 319 SQKKQAEHSITGKRIGTEGSREHEEKLLWELLSKRRKQQEP 359
>At3g53840.1 68416.m05948 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 639
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -2
Query: 250 CRLALNSRRSQASDSLTGHRIGSLDSNQKDSPRGTCLISRCPHKEA 113
CR LNS S S +L R Q DS C ++RC +++
Sbjct: 231 CRDLLNSVCSNDSTNLGQKRCFCKKGFQWDSVNAVCEVNRCSKRKS 276
>At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing
protein / helicase and RNase D C-terminal
domain-containing protein / HRDC domain-containing
protein similar to SP|Q01780 Polymyositis/scleroderma
autoantigen 2 {Homo sapiens}; contains Pfam profiles
PF00570: HRDC domain, PF01612: 3'-5' exonuclease
Length = 738
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 88 ADATDDVTEPPCADSEILDKCPVDCPSDYCPTSRCDDQSS 207
ADA D V+E P S L + P C ++ DD S
Sbjct: 673 ADALDRVSETPSKGSPSLTQKPKTCNTEVIVLDDDDDSES 712
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/31 (32%), Positives = 10/31 (32%)
Frame = +1
Query: 160 CPSDYCPTSRCDDQSSCPKPASADCSAPACK 252
CP CP C C CS P K
Sbjct: 307 CPKPRCPKPSCSCGCGCGDCGCFKCSCPTLK 337
>At4g34900.1 68417.m04949 xanthine dehydrogenase, putative similar
to xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
[SP|P47990], from Calliphora vicina [SP|P08793];
contains Pfam profile PF02738 Aldehyde oxidase and
xanthine dehydrogenase, molybdopterin binding domain
Length = 1364
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +1
Query: 58 LTAAWLVVAKADATDDVTEPPCA--DSEILDKCP 153
L+A V +A+ TDD PPC + +L K P
Sbjct: 608 LSARMQVTGEAEYTDDTPLPPCTLHAALVLSKVP 641
>At2g14720.2 68415.m01657 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 121 CADSEILDKCPVDCPSDYCP--TSRCDDQSSCPKPASADCSAPACK 252
C D + + KC +CP + +C+D + C + + C +CK
Sbjct: 493 CVDKDSV-KC--ECPPGFKGDGVKKCEDINECKEKKACQCPECSCK 535
>At2g14720.1 68415.m01656 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 121 CADSEILDKCPVDCPSDYCP--TSRCDDQSSCPKPASADCSAPACK 252
C D + + KC +CP + +C+D + C + + C +CK
Sbjct: 493 CVDKDSV-KC--ECPPGFKGDGVKKCEDINECKEKKACQCPECSCK 535
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,238,421
Number of Sequences: 28952
Number of extensions: 86704
Number of successful extensions: 244
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,070,560
effective HSP length: 68
effective length of database: 10,101,824
effective search space used: 212138304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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