Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0179.Seq
(327 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2 p... 23 1.1
DQ659247-1|ABG47445.1| 980|Tribolium castaneum chitinase 7 prot... 23 1.1
AY600513-1|AAT11861.1| 314|Tribolium castaneum spalt-like prote... 22 1.4
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 22 1.9
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 22 1.9
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 22 1.9
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 22 1.9
DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulati... 21 3.3
AY695256-1|AAW21973.1| 168|Tribolium castaneum ventral nerve co... 21 3.3
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro... 21 4.3
>EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2
protein.
Length = 535
Score = 22.6 bits (46), Expect = 1.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -2
Query: 215 GSPLCSPRRCPANACPLYRWIRQRPGYP 132
G+P+C NA L +W + G+P
Sbjct: 324 GNPICVQIPWDKNAEALAKWANGQTGFP 351
>DQ659247-1|ABG47445.1| 980|Tribolium castaneum chitinase 7
protein.
Length = 980
Score = 22.6 bits (46), Expect = 1.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 212 SPLCSPRRCPANACPLYRWIRQRPG 138
SP+ R P C + W ++RPG
Sbjct: 513 SPISKKVRPPQVLCYITSWSQKRPG 537
>AY600513-1|AAT11861.1| 314|Tribolium castaneum spalt-like protein
protein.
Length = 314
Score = 22.2 bits (45), Expect = 1.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 202 HRGEPSSLSPTPIQ 243
H GEP+ L+P IQ
Sbjct: 217 HTGEPTDLTPEQIQ 230
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 21.8 bits (44), Expect = 1.9
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 2 LVFRVVINTRIKK*STMSTYFQYPTPELQEELKKIAQA-IVAPAKGILAADESTGT 166
L+ +IN + T + EL+EE K+ +A A K +L +S GT
Sbjct: 1046 LILYSIINLNVVSWGTREVAVKKTKKELEEEKKQAEEAKRKAKQKSLLGFLQSGGT 1101
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 21.8 bits (44), Expect = 1.9
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 2 LVFRVVINTRIKK*STMSTYFQYPTPELQEELKKIAQA-IVAPAKGILAADESTGT 166
L+ +IN + T + EL+EE K+ +A A K +L +S GT
Sbjct: 1046 LILYSIINLNVVSWGTREVAVKKTKKELEEEKKQAEEAKRKAKQKSLLGFLQSGGT 1101
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
protein.
Length = 1558
Score = 21.8 bits (44), Expect = 1.9
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 2 LVFRVVINTRIKK*STMSTYFQYPTPELQEELKKIAQA-IVAPAKGILAADESTGT 166
L+ +IN + T + EL+EE K+ +A A K +L +S GT
Sbjct: 1046 LILYSIINLNVVSWGTREVAVKKTKKELEEEKKQAEEAKRKAKQKSLLGFLQSGGT 1101
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
protein.
Length = 1558
Score = 21.8 bits (44), Expect = 1.9
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 2 LVFRVVINTRIKK*STMSTYFQYPTPELQEELKKIAQA-IVAPAKGILAADESTGT 166
L+ +IN + T + EL+EE K+ +A A K +L +S GT
Sbjct: 1046 LILYSIINLNVVSWGTREVAVKKTKKELEEEKKQAEEAKRKAKQKSLLGFLQSGGT 1101
>DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulation
protein.
Length = 947
Score = 21.0 bits (42), Expect = 3.3
Identities = 8/28 (28%), Positives = 13/28 (46%)
Frame = -2
Query: 221 DDGSPLCSPRRCPANACPLYRWIRQRPG 138
++G+ C CP CP + + PG
Sbjct: 699 ENGNNKCFTMECPQVTCPDNMKLEKVPG 726
>AY695256-1|AAW21973.1| 168|Tribolium castaneum ventral nerve cord
defective protein protein.
Length = 168
Score = 21.0 bits (42), Expect = 3.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 236 GVGDNDDGSPLCSPRR 189
G+ D + +PL SPRR
Sbjct: 103 GMHDQQNNNPLPSPRR 118
>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
Length = 2700
Score = 20.6 bits (41), Expect = 4.3
Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Frame = +3
Query: 150 TNPPVQWASVCRTSAW---RTQRRTVVVIANSYSALT 251
T P W S TS W T RRT + S T
Sbjct: 1036 TTKPSTWWSSTTTSPWWTTTTTRRTTTTRPTTTSTTT 1072
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,867
Number of Sequences: 336
Number of extensions: 1351
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used: 6261139
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
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