Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0179.Seq
         (327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   0.95 
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    24   6.7  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    24   6.7  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    23   8.8  

>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 0.95
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 71  PTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQL 235
           P PE ++E  K+A++   P K   +A ES     K  +++  + +  N   YR L
Sbjct: 477 PKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENL--KESHVNETPYRGL 529


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = -2

Query: 215 GSPL-CSPRRCPANACPL 165
           G+P+ C   RCP NAC +
Sbjct: 247 GNPVECDISRCPLNACKI 264


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 192 AWRTQRRTVVVIANSYSA 245
           AW+   R++VV+AN+ SA
Sbjct: 323 AWKPDLRSLVVVANTASA 340


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 175 LAHCTGGFVSGQDTLC 128
           + HCTGG++ G    C
Sbjct: 283 VVHCTGGYLLGAAATC 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,271,795
Number of Sequences: 5004
Number of extensions: 21338
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)