Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0179.Seq
(327 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0142 - 1121762-1122822,1123087-1123114 71 2e-13
01_06_1721 - 39426957-39428005,39428812-39428839 69 7e-13
06_03_0718 + 23840198-23840409,23841368-23841518,23842190-238422... 68 2e-12
05_04_0255 + 19462668-19462695,19463443-19464491 68 2e-12
11_01_0448 - 3469398-3469676,3470015-3470284,3470386-3470476,347... 64 2e-11
01_01_0516 + 3778891-3779069,3779436-3779541,3780526-3780888 30 0.49
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 29 1.1
05_04_0272 + 19624898-19625071,19625909-19626370,19626471-196269... 28 1.5
06_02_0240 + 13397512-13397856 28 2.0
01_06_1604 + 38567374-38567391,38567505-38567636,38569377-385694... 27 4.6
05_06_0138 + 25946545-25946632,25946715-25947489,25947627-259479... 26 6.1
02_03_0243 - 16791789-16793306 26 6.1
08_02_0502 + 17844775-17845092,17845528-17845634,17846039-178464... 26 8.0
07_03_1535 + 27531468-27531892,27531988-27532407,27533183-275333... 26 8.0
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070... 26 8.0
>08_01_0142 - 1121762-1122822,1123087-1123114
Length = 362
Score = 71.3 bits (167), Expect = 2e-13
Identities = 35/54 (64%), Positives = 42/54 (77%)
Frame = +2
Query: 86 QEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSS 247
++EL + A I P KGILAADESTGT+GKRL IGVEN EENRR R+LLF++
Sbjct: 9 KDELIRNAAYIGTPGKGILAADESTGTIGKRLASIGVENVEENRRALRELLFTA 62
Score = 30.3 bits (65), Expect = 0.37
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +1
Query: 268 IXGVILXHETLYQMADDGTP 327
+ GVIL ETLYQ DGTP
Sbjct: 69 LSGVILFEETLYQSTRDGTP 88
>01_06_1721 - 39426957-39428005,39428812-39428839
Length = 358
Score = 69.3 bits (162), Expect = 7e-13
Identities = 36/64 (56%), Positives = 42/64 (65%)
Frame = +2
Query: 86 QEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSDAGSPR 265
++EL K A I P KGILAADESTGT+GKR I VEN EENRR R+LLF++
Sbjct: 9 KDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEENRRSLRELLFTTPGALQH 68
Query: 266 TSXV 277
S V
Sbjct: 69 LSGV 72
Score = 29.5 bits (63), Expect = 0.65
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 262 ENIXGVILXHETLYQMADDGTP 327
+++ GVIL ETLYQ DG P
Sbjct: 67 QHLSGVILFEETLYQKTKDGKP 88
>06_03_0718 +
23840198-23840409,23841368-23841518,23842190-23842294,
23843476-23843608,23844164-23844849,23844937-23845299
Length = 549
Score = 67.7 bits (158), Expect = 2e-12
Identities = 33/52 (63%), Positives = 39/52 (75%)
Frame = +2
Query: 92 ELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSS 247
EL K A+ I P KGILAADESTGT+GKRL I VEN E NR+ R+LLF++
Sbjct: 202 ELIKTAKYIATPGKGILAADESTGTIGKRLASINVENVEPNRQALRELLFTT 253
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 268 IXGVILXHETLYQMADDGTP 327
+ GVIL ETLYQ GTP
Sbjct: 260 LSGVILFEETLYQSTAAGTP 279
>05_04_0255 + 19462668-19462695,19463443-19464491
Length = 358
Score = 67.7 bits (158), Expect = 2e-12
Identities = 34/52 (65%), Positives = 38/52 (73%)
Frame = +2
Query: 86 QEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLF 241
++EL K A I P KGILAADESTGT+GKR I VEN EENRR R+LLF
Sbjct: 9 KDELIKNAAYIGTPGKGILAADESTGTIGKRFASINVENVEENRRSLRELLF 60
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 268 IXGVILXHETLYQMADDGTP 327
+ GVIL ETLYQ DG P
Sbjct: 69 LSGVILFEETLYQKTKDGKP 88
>11_01_0448 -
3469398-3469676,3470015-3470284,3470386-3470476,
3470581-3470690,3470867-3471136,3471768-3471914
Length = 388
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/53 (56%), Positives = 38/53 (71%)
Frame = +2
Query: 89 EELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSS 247
+EL K A+ I +P +GILA DES T GKRL IG+ENTE NR+ YR LL ++
Sbjct: 43 DELVKTAKTIASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTA 95
>01_01_0516 + 3778891-3779069,3779436-3779541,3780526-3780888
Length = 215
Score = 29.9 bits (64), Expect = 0.49
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -1
Query: 186 SCKRLPIVPVDSSAARIPFAG 124
+C +LP+VP+D++AA FAG
Sbjct: 142 TCDKLPVVPLDAAAAHSIFAG 162
>06_01_1052 +
8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = -1
Query: 180 KRLPIVPVDSSAARIPFAGATIA*AIFLSSSCS 82
K L IV +SS ARIP ++IA +FLS S S
Sbjct: 562 KDLGIVSHESSNARIPLHVSSIAHQLFLSGSAS 594
>05_04_0272 +
19624898-19625071,19625909-19626370,19626471-19626905,
19626992-19627237,19627318-19628085,19628245-19628417,
19629337-19629440,19629525-19630127,19630210-19630214
Length = 989
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +3
Query: 147 LTNPPVQWASVCRTSAWRTQRRTVVVIANSYSALTLALREHLRCDPVXRDPLP-DG 311
+T P QW VCR + W + + I ++ + CD D +P DG
Sbjct: 619 VTAEPTQWWDVCRRTNWPERDENIANIVFHNQRNSMMAMDASDCDSEHSDSVPSDG 674
>06_02_0240 + 13397512-13397856
Length = 114
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +1
Query: 130 KGYPGR*RIHRYNGQAFA---GHRRGEHRGEPSSL 225
+G PG R+HR+ +A + HR EHR PS L
Sbjct: 23 RGLPGTRRLHRHTLEAMSLRRCHRTVEHRTTPSLL 57
>01_06_1604 +
38567374-38567391,38567505-38567636,38569377-38569445,
38569545-38569775,38570883-38571013,38571471-38571629,
38573078-38573366
Length = 342
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 152 ESTGTMGKRLQDIGVENTEENRRRYRQLL 238
ESTG G + + + + + N RRYRQLL
Sbjct: 207 ESTGCGGTKYEPLIGSDLKANIRRYRQLL 235
>05_06_0138 +
25946545-25946632,25946715-25947489,25947627-25947910,
25948100-25948238,25948323-25948394,25948477-25948548,
25948726-25948806,25948894-25949054,25949162-25949424,
25949661-25949787,25949974-25950042,25950154-25950346,
25950446-25950860
Length = 912
Score = 26.2 bits (55), Expect = 6.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +3
Query: 135 VSWPLTNPPVQWASV 179
V WP +NPP +W+ +
Sbjct: 224 VWWPWSNPPAEWSDI 238
>02_03_0243 - 16791789-16793306
Length = 505
Score = 26.2 bits (55), Expect = 6.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 162 VQWASVCRTSAWR 200
++WAS+CR S WR
Sbjct: 438 LRWASLCRRSGWR 450
>08_02_0502 +
17844775-17845092,17845528-17845634,17846039-17846492,
17846623-17846694,17846804-17846925,17847079-17847294,
17847392-17847500,17847618-17847730,17847916-17848063,
17848274-17848396
Length = 593
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 156 PPVQWASVCRTSAWRTQRRTVVVIANSYSALTLALREH 269
PP+ S C + WR +RR V V+A + +A R H
Sbjct: 26 PPLPAVS-CSSRWWRGRRRCVAVVAMAAAAAADGERPH 62
>07_03_1535 +
27531468-27531892,27531988-27532407,27533183-27533341,
27533461-27533782
Length = 441
Score = 25.8 bits (54), Expect = 8.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 227 DNDDGSPLCSPRRCP 183
D+D+ PL PRRCP
Sbjct: 96 DDDERRPLYEPRRCP 110
>02_05_0877 + 32403363-32404662,32406545-32406630,32406709-32407077,
32407174-32407257,32407362-32407784,32408368-32408434,
32409238-32409430,32409577-32409680,32409787-32409990,
32410174-32410427,32410511-32410735,32410812-32411033,
32411109-32411162,32411337-32411402,32411496-32411633,
32411979-32412032,32412334-32412393,32412975-32413340,
32413415-32413582
Length = 1478
Score = 25.8 bits (54), Expect = 8.0
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 86 QEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRY 226
+E+ K AQAI+A A + A T+ K D V +EN ++
Sbjct: 987 KEKRHKEAQAILAAAAAAVVASSRNSTVRKDANDDVVPAKQENSPKF 1033
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,303,828
Number of Sequences: 37544
Number of extensions: 178117
Number of successful extensions: 485
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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