Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0179.Seq
(327 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0) 99 1e-21
SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0) 99 1e-21
SB_24645| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.89
SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31) 28 1.6
SB_18905| Best HMM Match : Nop (HMM E-Value=0) 28 2.1
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002) 27 2.7
SB_9661| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.6
SB_38784| Best HMM Match : Apo-VLDL-II (HMM E-Value=8.3) 27 4.8
SB_56271| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.3
SB_46732| Best HMM Match : AAA (HMM E-Value=0.044) 26 6.3
SB_38004| Best HMM Match : CXCXC (HMM E-Value=5.5e-08) 26 6.3
SB_31380| Best HMM Match : zf-CCHC (HMM E-Value=4.6e-05) 26 8.3
SB_20133| Best HMM Match : Extensin_2 (HMM E-Value=2.1) 26 8.3
SB_18524| Best HMM Match : Peptidase_A17 (HMM E-Value=8.3e-21) 26 8.3
SB_10506| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9) 26 8.3
SB_7613| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9) 26 8.3
>SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 949
Score = 98.7 bits (235), Expect = 1e-21
Identities = 48/58 (82%), Positives = 53/58 (91%)
Frame = +2
Query: 74 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSS 247
TPEL+ ELK+IA+AIVA KGILAADESTGTMGKRL +IGVENTEENRR YRQLLF+S
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLANIGVENTEENRRLYRQLLFTS 63
Score = 39.5 bits (88), Expect = 6e-04
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +1
Query: 256 LSENIXGVILXHETLYQMADDGTP 327
+S I GVIL HET+YQ ADDGTP
Sbjct: 67 MSNAISGVILFHETVYQKADDGTP 90
>SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 304
Score = 98.7 bits (235), Expect = 1e-21
Identities = 48/58 (82%), Positives = 53/58 (91%)
Frame = +2
Query: 74 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSS 247
TPEL+ ELK+IA+AIVA KGILAADESTGTMGKRL +IGVENTEENRR YRQLLF+S
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLANIGVENTEENRRLYRQLLFTS 63
Score = 39.5 bits (88), Expect = 6e-04
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +1
Query: 256 LSENIXGVILXHETLYQMADDGTP 327
+S I GVIL HET+YQ ADDGTP
Sbjct: 67 MSNAISGVILFHETVYQKADDGTP 90
>SB_24645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 29.1 bits (62), Expect = 0.89
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +2
Query: 59 YFQYPTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLL 238
Y Q E ELK+ Q+ + I + +S G GK + E EE RY +
Sbjct: 91 YLQMNDEESLPELKRARQSFITMVTRINNSSQSVGKDGKAKTSLFSE--EEKDTRYLVIA 148
Query: 239 FSSD 250
FS+D
Sbjct: 149 FSND 152
>SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)
Length = 708
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 88 GGAQEDRSSNCSSRKGYPGR*RIHRYNG-QAFAGHRRGEHRGEPSS 222
GG+Q + +GYPG R + G QA AG G RG P +
Sbjct: 618 GGSQAEAGGMWGGARGYPGTGRKGGHGGSQAKAGGMWGGARGYPGT 663
>SB_18905| Best HMM Match : Nop (HMM E-Value=0)
Length = 194
Score = 27.9 bits (59), Expect = 2.1
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Frame = +2
Query: 59 YFQYPTPELQEELKKIAQAIVAPAKGILAA-----DEST-GTMGKRLQD 187
YF + ++++K A IVA AK LAA EST GT+GKRLQ+
Sbjct: 111 YFSPIVQNMPQDMRKKAARIVA-AKCTLAARVDSFHESTEGTIGKRLQE 158
>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
Length = 3616
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +2
Query: 80 ELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSSD 250
E+Q+ L K AQ +V+ +KG+ D + + K + +N E++R R + S D
Sbjct: 1006 EIQQGLNKAAQCVVSVSKGVSQWDRTCRALRKAEKRDDSDN-EDSRSRSASNVGSDD 1061
>SB_9661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +2
Query: 101 KIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQ 232
++ + ++G L++DES K D +E +++ RY+Q
Sbjct: 458 RLRSLVATTSQGFLSSDESPALAEKERHDKALEKYQQDYGRYQQ 501
>SB_38784| Best HMM Match : Apo-VLDL-II (HMM E-Value=8.3)
Length = 439
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +2
Query: 68 YPTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRY 226
YP P + +K + + P K L A S + R++ +++ ++ R +Y
Sbjct: 303 YPDPSVAHRYRKQRRPVPVPGKRGLQATPSEELIIARIKRYAIDDRQKGRTKY 355
>SB_56271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +2
Query: 71 PTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRY 226
P P + K Q + P K L A S + R++ V++ ++ R +Y
Sbjct: 695 PDPSVAHRYHKQGQPVPVPGKRELQATPSKELITARIKRYAVDDRQKGRTKY 746
>SB_46732| Best HMM Match : AAA (HMM E-Value=0.044)
Length = 430
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 188 IGVENTEENRRRYRQLLFSSDAGSPRT 268
I NT+ N+ YR LLF G+ +T
Sbjct: 317 IATSNTKRNKGMYRNLLFYGPPGTGKT 343
>SB_38004| Best HMM Match : CXCXC (HMM E-Value=5.5e-08)
Length = 240
Score = 26.2 bits (55), Expect = 6.3
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 212 SPLCSPRRCPANACPLYRW 156
S C PA CPLYRW
Sbjct: 153 SATCKCLCSPAQRCPLYRW 171
>SB_31380| Best HMM Match : zf-CCHC (HMM E-Value=4.6e-05)
Length = 1082
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 189 SAWRTQRRTVVVIANSYSALTLALREHLRCDPVXRDPLPD 308
+A R QR +++ A Y + +EH CD + R P D
Sbjct: 666 AASRMQRWAIILSAYDYEIEYRSSQEHSNCDALSRLPHED 705
>SB_20133| Best HMM Match : Extensin_2 (HMM E-Value=2.1)
Length = 762
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 131 KGILAADESTGTMG--KRLQDIGVENTEENRRRY 226
K + AA ES + K+ +D+ VEN EN++ Y
Sbjct: 593 KEVSAATESKDALDETKKCKDLPVENAYENKKNY 626
>SB_18524| Best HMM Match : Peptidase_A17 (HMM E-Value=8.3e-21)
Length = 620
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 147 LTNPPVQWASVC-RTSAWRTQRRTVVVIANSYSALTLALREHLRCDPVXRDPL 302
L P +W + R S W+TQR T +AL +E+ R P+ D +
Sbjct: 367 LKREPDEWDDLLQRNSYWKTQRVTAWAQRFRANALAKMRKENKRKGPLTTDDI 419
>SB_10506| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9)
Length = 666
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 189 SAWRTQRRTVVVIANSYSALTLALREHLRCDPVXRDPLPD 308
+A R QR +++ A Y + +EH CD + R P D
Sbjct: 275 AASRMQRWAIILSAYDYEIEYRSSQEHSNCDALSRLPHED 314
>SB_7613| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9)
Length = 641
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 189 SAWRTQRRTVVVIANSYSALTLALREHLRCDPVXRDPLPD 308
+A R QR +++ A Y + +EH CD + R P D
Sbjct: 384 AASRMQRWAIILSAYDYEIEYRSSQEHSNCDALSRLPHED 423
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,164,149
Number of Sequences: 59808
Number of extensions: 185384
Number of successful extensions: 575
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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