Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0179.Seq
(327 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical pr... 94 2e-20
D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1 pr... 94 2e-20
U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical p... 72 1e-13
U13070-14|AAM22057.1| 259|Caenorhabditis elegans Hypothetical p... 72 1e-13
D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2 pr... 72 1e-13
Z29094-15|CAA82341.3| 672|Caenorhabditis elegans Hypothetical p... 29 0.79
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 29 1.0
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 29 1.0
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 29 1.0
Z47809-2|CAA87780.1| 298|Caenorhabditis elegans Hypothetical pr... 27 3.2
S50380-1|AAB24366.1| 161|Caenorhabditis elegans succinate-ubiqu... 27 3.2
AB008569-1|BAA23717.1| 297|Caenorhabditis elegans iron-sulfur s... 27 3.2
Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical pr... 26 5.6
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ... 26 5.6
AB006659-1|BAA21847.1| 655|Caenorhabditis elegans E6-AP ubiquit... 26 5.6
U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated p... 26 7.4
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p... 26 7.4
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p... 26 7.4
AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucle... 26 7.4
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle... 26 7.4
AC024826-4|AAF60804.2| 309|Caenorhabditis elegans Hypothetical ... 26 7.4
Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical pr... 25 9.7
U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormon... 25 9.7
U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone... 25 9.7
AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear recep... 25 9.7
AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal t... 25 9.7
AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal t... 25 9.7
AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear recep... 25 9.7
>Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical
protein T05D4.1 protein.
Length = 365
Score = 93.9 bits (223), Expect = 2e-20
Identities = 44/68 (64%), Positives = 55/68 (80%)
Frame = +2
Query: 50 MSTYFQYPTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYR 229
M++Y Q+ T ++EL+ IA AIV P KGILAADESTG+M KRL IG+ENTEENRR+YR
Sbjct: 1 MASYSQFLTKAQEDELRSIANAIVTPGKGILAADESTGSMDKRLNSIGLENTEENRRKYR 60
Query: 230 QLLFSSDA 253
QLLF++ A
Sbjct: 61 QLLFTAGA 68
Score = 34.3 bits (75), Expect = 0.021
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1
Query: 256 LSENIXGVILXHETLYQMADDGTP 327
L++ I GVI+ HET YQ DDG P
Sbjct: 70 LNKYISGVIMFHETFYQKTDDGKP 93
>D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1
protein.
Length = 366
Score = 93.9 bits (223), Expect = 2e-20
Identities = 44/68 (64%), Positives = 55/68 (80%)
Frame = +2
Query: 50 MSTYFQYPTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYR 229
M++Y Q+ T ++EL+ IA AIV P KGILAADESTG+M KRL IG+ENTEENRR+YR
Sbjct: 1 MASYSQFLTKAQEDELRSIANAIVTPGKGILAADESTGSMDKRLNSIGLENTEENRRKYR 60
Query: 230 QLLFSSDA 253
QLLF++ A
Sbjct: 61 QLLFTAGA 68
Score = 34.3 bits (75), Expect = 0.021
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1
Query: 256 LSENIXGVILXHETLYQMADDGTP 327
L++ I GVI+ HET YQ DDG P
Sbjct: 70 LNKYISGVIMFHETFYQKTDDGKP 93
>U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical
protein F01F1.12a protein.
Length = 366
Score = 71.7 bits (168), Expect = 1e-13
Identities = 35/58 (60%), Positives = 44/58 (75%)
Frame = +2
Query: 74 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSS 247
T ++EL +IA IV KGILAADESTGT+GKRL I +EN E NR++YRQLLF++
Sbjct: 13 TQAQKDELHQIALKIVQDGKGILAADESTGTIGKRLDAINLENNETNRQKYRQLLFTT 70
>U13070-14|AAM22057.1| 259|Caenorhabditis elegans Hypothetical
protein F01F1.12b protein.
Length = 259
Score = 71.7 bits (168), Expect = 1e-13
Identities = 35/58 (60%), Positives = 44/58 (75%)
Frame = +2
Query: 74 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSS 247
T ++EL +IA IV KGILAADESTGT+GKRL I +EN E NR++YRQLLF++
Sbjct: 13 TQAQKDELHQIALKIVQDGKGILAADESTGTIGKRLDAINLENNETNRQKYRQLLFTT 70
>D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2
protein.
Length = 366
Score = 71.7 bits (168), Expect = 1e-13
Identities = 35/58 (60%), Positives = 44/58 (75%)
Frame = +2
Query: 74 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLLFSS 247
T ++EL +IA IV KGILAADESTGT+GKRL I +EN E NR++YRQLLF++
Sbjct: 13 TQAQKDELHQIALKIVQDGKGILAADESTGTIGKRLDAINLENNETNRQKYRQLLFTT 70
>Z29094-15|CAA82341.3| 672|Caenorhabditis elegans Hypothetical
protein C07A9.11 protein.
Length = 672
Score = 29.1 bits (62), Expect = 0.79
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 166 NGQAFAGHRRGEHRGEPSSLSPTPIQL*RWLSENIXGVILXH 291
+G F GH E R +SL P P+Q+ W S++I + H
Sbjct: 367 HGHVFQGH---EARSRAASLVPEPMQIKSWRSKDILKDLAEH 405
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 28.7 bits (61), Expect = 1.0
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Frame = +2
Query: 80 ELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQ-------DIGV-----ENTEENRRR 223
E++E+ +K++ + + ++ T+ +L+ D+GV E TEEN +R
Sbjct: 747 EVREKNRKLSTEMAEEKSNLSKNEKQLETVNAKLKLAEDLQTDVGVIQQLYEQTEENEKR 806
Query: 224 YRQLLFSSDA 253
Y QL+ SD+
Sbjct: 807 YEQLVSESDS 816
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 28.7 bits (61), Expect = 1.0
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Frame = +2
Query: 80 ELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQ-------DIGV-----ENTEENRRR 223
E++E+ +K++ + + ++ T+ +L+ D+GV E TEEN +R
Sbjct: 733 EVREKNRKLSTEMAEEKSNLSKNEKQLETVNAKLKLAEDLQTDVGVIQQLYEQTEENEKR 792
Query: 224 YRQLLFSSDA 253
Y QL+ SD+
Sbjct: 793 YEQLVSESDS 802
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 28.7 bits (61), Expect = 1.0
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 12/70 (17%)
Frame = +2
Query: 80 ELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQ-------DIGV-----ENTEENRRR 223
E++E+ +K++ + + ++ T+ +L+ D+GV E TEEN +R
Sbjct: 733 EVREKNRKLSTEMAEEKSNLSKNEKQLETVNAKLKLAEDLQTDVGVIQQLYEQTEENEKR 792
Query: 224 YRQLLFSSDA 253
Y QL+ SD+
Sbjct: 793 YEQLVSESDS 802
>Z47809-2|CAA87780.1| 298|Caenorhabditis elegans Hypothetical
protein F42A8.2 protein.
Length = 298
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = -2
Query: 278 TPXMFSESQRQS*IGVGDNDDGSPLCSPRRCPANACPLYRW 156
TP E Q + D DG C C + +CP Y W
Sbjct: 175 TPLTLGEKQMHQSVAERDRLDGLYECILCACCSTSCPSYWW 215
>S50380-1|AAB24366.1| 161|Caenorhabditis elegans
succinate-ubiquinone oxidoreductasecomplex II
iron-sulfur subunit protein.
Length = 161
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = -2
Query: 278 TPXMFSESQRQS*IGVGDNDDGSPLCSPRRCPANACPLYRW 156
TP E Q + D DG C C + +CP Y W
Sbjct: 69 TPLTLGEKQMHQSVAERDRLDGLYECILCACCSTSCPSYWW 109
>AB008569-1|BAA23717.1| 297|Caenorhabditis elegans iron-sulfur
subunit of mitochondrialsuccinate dehydrogenase protein.
Length = 297
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = -2
Query: 278 TPXMFSESQRQS*IGVGDNDDGSPLCSPRRCPANACPLYRW 156
TP E Q + D DG C C + +CP Y W
Sbjct: 174 TPLTLGEKQMHQSVAERDRLDGLYECILCACCSTSCPSYWW 214
>Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical
protein C45G3.1 protein.
Length = 1186
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 173 KRLQDIGVENTEEN-RRRYRQLLFSSD 250
KR VENT+EN RRRY+++ +D
Sbjct: 120 KRSDTSEVENTQENARRRYQRIFEKND 146
>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
protein Y39A1C.2 protein.
Length = 1066
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 265 SRRASVRAE*ELAITTTVLLCVLHADVLQTLAHCTGGFVSG 143
S +S ++E E T ++C ++ L T+ H G +SG
Sbjct: 432 SASSSSKSESEPPPTLIAIVCQVYMTALNTMVHMKGEIISG 472
>AB006659-1|BAA21847.1| 655|Caenorhabditis elegans E6-AP
ubiquitin-protein ligase protein.
Length = 655
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 265 SRRASVRAE*ELAITTTVLLCVLHADVLQTLAHCTGGFVSG 143
S +S ++E E T ++C ++ L T+ H G +SG
Sbjct: 21 SASSSSKSESEPPPTLIAIVCQVYMTALNTMVHMKGEIISG 61
>U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated
protein 73, isoform b protein.
Length = 1638
Score = 25.8 bits (54), Expect = 7.4
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 23 NTRIKK*S-TMSTYFQYPTPELQEELKKIAQAIVAPAKGILAAD-ESTGTMGKRLQD 187
N +KK ++ F P ++ E KIA I+ P+KG+ D E+T L D
Sbjct: 203 NAALKKSQHAKNSIFNVPVEGIETEGNKIATRILKPSKGVKNPDLEATTPYISNLTD 259
>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
protein 73, isoform f protein.
Length = 2140
Score = 25.8 bits (54), Expect = 7.4
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 23 NTRIKK*S-TMSTYFQYPTPELQEELKKIAQAIVAPAKGILAAD-ESTGTMGKRLQD 187
N +KK ++ F P ++ E KIA I+ P+KG+ D E+T L D
Sbjct: 203 NAALKKSQHAKNSIFNVPVEGIETEGNKIATRILKPSKGVKNPDLEATTPYISNLTD 259
>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
protein 73, isoform a protein.
Length = 2488
Score = 25.8 bits (54), Expect = 7.4
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 23 NTRIKK*S-TMSTYFQYPTPELQEELKKIAQAIVAPAKGILAAD-ESTGTMGKRLQD 187
N +KK ++ F P ++ E KIA I+ P+KG+ D E+T L D
Sbjct: 203 NAALKKSQHAKNSIFNVPVEGIETEGNKIATRILKPSKGVKNPDLEATTPYISNLTD 259
>AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine
nucleotide exchange factorUNC-73B protein.
Length = 1638
Score = 25.8 bits (54), Expect = 7.4
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 23 NTRIKK*S-TMSTYFQYPTPELQEELKKIAQAIVAPAKGILAAD-ESTGTMGKRLQD 187
N +KK ++ F P ++ E KIA I+ P+KG+ D E+T L D
Sbjct: 203 NAALKKSQHAKNSIFNVPVEGIETEGNKIATRILKPSKGVKNPDLEATTPYISNLTD 259
>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine
nucleotide exchange factorUNC-73A protein.
Length = 2488
Score = 25.8 bits (54), Expect = 7.4
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 23 NTRIKK*S-TMSTYFQYPTPELQEELKKIAQAIVAPAKGILAAD-ESTGTMGKRLQD 187
N +KK ++ F P ++ E KIA I+ P+KG+ D E+T L D
Sbjct: 203 NAALKKSQHAKNSIFNVPVEGIETEGNKIATRILKPSKGVKNPDLEATTPYISNLTD 259
>AC024826-4|AAF60804.2| 309|Caenorhabditis elegans Hypothetical
protein Y55F3AM.5 protein.
Length = 309
Score = 25.8 bits (54), Expect = 7.4
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 95 LKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQL 235
L + + I PA ILA S + L+ + NTE RR YRQ+
Sbjct: 140 LTQKSNGIQIPALKILALMYSADDVAIPLEQMDYLNTEYFRRLYRQI 186
>Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical
protein W09D6.6 protein.
Length = 801
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 174 SVCRTSAWRTQRRTVVVIANSYSALTL 254
S+C S WR Q T + +A ++SA L
Sbjct: 117 SLCSFSKWRNQPSTPISLAFAFSAALL 143
>U41542-10|AAX88836.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform b protein.
Length = 486
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +2
Query: 11 RVVINTRIKK*STMSTYFQYPTPELQEEL 97
R VI R KK M TY Q PTP EL
Sbjct: 95 RDVIGKREKK-DNMKTYCQDPTPRTSPEL 122
>U41542-9|AAK39150.3| 542|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 35, isoform a protein.
Length = 542
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +2
Query: 11 RVVINTRIKK*STMSTYFQYPTPELQEEL 97
R VI R KK M TY Q PTP EL
Sbjct: 151 RDVIGKREKK-DNMKTYCQDPTPRTSPEL 178
>AY305836-1|AAR11981.1| 487|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 487
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +2
Query: 11 RVVINTRIKK*STMSTYFQYPTPELQEEL 97
R VI R KK M TY Q PTP EL
Sbjct: 96 RDVIGKREKK-DNMKTYCQDPTPRTSPEL 123
>AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 174 SVCRTSAWRTQRRTVVVIANSYSALTL 254
S+C S WR Q T + +A ++SA L
Sbjct: 117 SLCSFSKWRNQPSTPISLAFAFSAALL 143
>AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 174 SVCRTSAWRTQRRTVVVIANSYSALTL 254
S+C S WR Q T + +A ++SA L
Sbjct: 117 SLCSFSKWRNQPSTPISLAFAFSAALL 143
>AF273781-1|AAG15130.1| 508|Caenorhabditis elegans nuclear receptor
NHR-35 protein.
Length = 508
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +2
Query: 11 RVVINTRIKK*STMSTYFQYPTPELQEEL 97
R VI R KK M TY Q PTP EL
Sbjct: 117 RDVIGKREKK-DNMKTYCQDPTPRTSPEL 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,350,905
Number of Sequences: 27780
Number of extensions: 133904
Number of successful extensions: 395
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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