Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0179.Seq
         (327 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   1.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   3.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   3.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   3.8  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    20   6.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   8.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -2

Query: 227 DNDDGSPLCSPRRCPANACPLYRWIRQRPGYP 132
           D   G+P+C       N   L +W   + G+P
Sbjct: 324 DRMQGNPICVQIPWDKNVEALAKWANGQTGFP 355


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +3

Query: 156 PPVQWASVCRTSAW 197
           PP  W  V   SAW
Sbjct: 160 PPTNWVGVFGGSAW 173


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +3

Query: 156 PPVQWASVCRTSAW 197
           PP  W  V   SAW
Sbjct: 160 PPTNWVGVFGGSAW 173


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 156 PPVQWASVCRTSAWR 200
           PP  W SV   SAW+
Sbjct: 160 PPNNWLSVFWGSAWQ 174


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 80  ELQEELKKIAQAIVAPAKGILAADESTGTMGKRL 181
           E+ E LKK     + PA G+L + +   ++  R+
Sbjct: 282 EVSEFLKKNTGFTLRPAAGLLTSRDFLSSLAFRV 315


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +3

Query: 165 QWASVCRTSAWRTQRRTVVVIANSYSALTLALR 263
           +W       A   +R  +V++  +YS+L   L+
Sbjct: 277 EWRDFVDNYAEENKRDEIVLLTEAYSSLENTLK 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,060
Number of Sequences: 438
Number of extensions: 1770
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)