Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0178.Seq
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    26   1.6  
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    25   2.8  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   2.8  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   3.7  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    24   4.8  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    24   6.4  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    24   6.4  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    24   6.4  

>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +2

Query: 32  LIQTQTAQDPEHLAVVALMDIVTTV--VMEVYHPPAVPVTLIQTQTAKDPEHLAVAVLMD 205
           LIQT T  + +    VA+ DIVT +      +    +PVT++ +  +  P++LA+  + D
Sbjct: 455 LIQTSTFTEEQKEYGVAISDIVTRINSAFGDFSLDHLPVTILSSDLSY-PQYLALLSVAD 513


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 220 DCWNCIHKYCYRQMFWILRCLSLNQCYWN 134
           DC  C+H YC + +  +  C++ N  + N
Sbjct: 198 DCGYCLHVYCCKHLAHV-NCINCNTPWAN 225


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 29  TLIQTQTAQDPEHLAVVALMDIVTTVVMEVYHPPAVPVT 145
           T+  +Q+  +  HLA+ + +      V+ VY P A+  T
Sbjct: 149 TVFASQSNVEAAHLALASTLAAKAAPVIHVYEPDAIVTT 187



 Score = 24.2 bits (50), Expect = 4.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 143 TLIQTQTAKDPEHLAVAVLMDTVPTVVMEVYHPPAV 250
           T+  +Q+  +  HLA+A  +      V+ VY P A+
Sbjct: 149 TVFASQSNVEAAHLALASTLAAKAAPVIHVYEPDAI 184


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 7/34 (20%), Positives = 18/34 (52%)
 Frame = -1

Query: 124 MIHFHHDCCNYIHKCYYRQMFWILRCLSLNQCYW 23
           ++H     C+++  C Y ++ W +   ++  CY+
Sbjct: 330 ILHLLIRLCDFLKNCGYYELAWSIFQANMELCYF 363


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 268 FESVFWNCRWMIHFHHDCWNCI 203
           F+S   NC W++      WN +
Sbjct: 188 FKSFDLNCSWVVQLSFSSWNVV 209


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 3/19 (15%)
 Frame = -1

Query: 271 EFESVFWNCRWM---IHFH 224
           ++E +F+NC W+   I FH
Sbjct: 668 QYEKLFYNCEWIFEKIQFH 686


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 2   VYRPLAVPVTLIQTQTAQDPEHLAVVALMDIVTTVVMEVY 121
           V  PL    T +QTQ  Q PE    ++L++  T +  E Y
Sbjct: 190 VTSPLTTSQT-VQTQPPQSPEAKTELSLINTKTVIFPENY 228


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 139 WNCRWMIHFHHDCCNYIHKCYYRQM 65
           ++C +  HF H    YI  C  RQ+
Sbjct: 894 FSCPYYTHFCHPTRRYIDICVQRQL 918


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,053,202
Number of Sequences: 5004
Number of extensions: 19478
Number of successful extensions: 59
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)