Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0178.Seq
(319 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0081 + 646100-646346,646432-646848,647067-647170,648152-64... 28 1.8
01_06_0839 + 32340226-32340360,32340482-32340832,32341933-323420... 28 1.8
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 27 3.2
08_02_0243 - 14708055-14708416,14708487-14709324,14709482-147103... 27 4.2
08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100... 27 4.2
06_01_1138 - 9429447-9433868 27 4.2
02_01_0586 - 4334896-4335177,4336340-4338007 27 4.2
12_01_0177 - 1312229-1312498,1314758-1315630,1315729-1315885,131... 26 5.6
03_01_0187 - 1492732-1492935,1493708-1493765,1494871-1494947,149... 26 5.6
07_01_0846 + 6873655-6873783,6875175-6875368,6875923-6876007,687... 26 7.4
07_01_0752 - 5783305-5783416,5783739-5783836,5784550-5784675,578... 26 7.4
>06_01_0081 +
646100-646346,646432-646848,647067-647170,648152-648352,
649088-649798,649944-650674,650942-651017,651096-651182,
651429-651517,651917-651973,652402-652510,652590-652649,
652835-652919,653178-653242,653694-653753,653869-653913,
654697-654800,654877-655099
Length = 1156
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 157 SLNQCYW-NCRWMIHFHHDCCNYIHKCY 77
S N CY N +W++ F+ CN++ K Y
Sbjct: 231 SKNICYQRNIKWLMFFYLLLCNFLFKAY 258
>01_06_0839 +
32340226-32340360,32340482-32340832,32341933-32342013,
32342368-32343150
Length = 449
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 104 VVMEVYHPPAVPVTLIQTQTAKDPEHLAVAVLMDTVPTVVMEVYHPPAV 250
V+ V A+P + Q Q + E ++ +VL V EV HPP V
Sbjct: 397 VLARVEGGQAIPERIAQVQPFEADEAMSESVLTGNVSMSKTEVVHPPPV 445
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 17 AVPVTLIQTQTAQDPEHLAVVALMDIVTTVVMEVYHPPAVPVTL 148
A+P + Q Q + E ++ L V+ EV HPP V TL
Sbjct: 406 AIPERIAQVQPFEADEAMSESVLTGNVSMSKTEVVHPPPVYFTL 449
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = -1
Query: 232 HFHHDCWNC--IHKYCYRQMFWILRCL 158
HF+ +CWNC CY W L+ L
Sbjct: 769 HFYCECWNCSLYPLLCYLGPTWFLQYL 795
>08_02_0243 -
14708055-14708416,14708487-14709324,14709482-14710323,
14710466-14710520,14711535-14711549,14713030-14713033,
14713340-14713424,14714045-14714084
Length = 746
Score = 26.6 bits (56), Expect = 4.2
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 136 NCRWMIHFHHDCCNYIHKCYYRQM 65
N R ++ +HHD C + + YR++
Sbjct: 524 NLRCLLVYHHDACRSVKRDIYRKL 547
>08_01_0125 +
1001397-1001865,1002743-1002810,1003359-1003490,
1003649-1003810,1003973-1004260
Length = 372
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 125 PPAVPVTLIQTQTAKDPEHLAVAVLMDTVPTVVMEVYHP 241
PPAVP++ T +++ +H +VA +V Y+P
Sbjct: 308 PPAVPISSTDTHSSEQGQHSSVA---PRTTNIVTSAYNP 343
>06_01_1138 - 9429447-9433868
Length = 1473
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -1
Query: 223 HDCWNCIHKYCYRQMFWILRC-LSLNQCYWNCRWMIH 116
HDC NCI Y + R +C W W++H
Sbjct: 75 HDCSNCIDIYLQHGDPAVYRARRGRCRCLWWASWLVH 111
>02_01_0586 - 4334896-4335177,4336340-4338007
Length = 649
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = -1
Query: 262 SVFWNCRWMIHFHHDCWNCIH--KYCY 188
SV WN + + HH+C+ C K CY
Sbjct: 575 SVVWNFLQVKNSHHECYQCQEGLKSCY 601
>12_01_0177 -
1312229-1312498,1314758-1315630,1315729-1315885,
1316207-1316247
Length = 446
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = -1
Query: 169 LRCLSLNQCYWNCRWMIHFHHDCCNYIHKCYYRQMFWILRCLSLNQCY 26
+R L Q C + CN +H + + L+CLS+ C+
Sbjct: 240 VRLQHLEQLISKCHVLEWLSIQSCNQLHNLHVSEPLCRLQCLSIQGCH 287
>03_01_0187 -
1492732-1492935,1493708-1493765,1494871-1494947,
1495086-1495160,1495259-1495315,1495451-1495567,
1495805-1495915,1496029-1496151,1496304-1496393,
1496480-1496605,1496687-1496740,1496975-1497055,
1497147-1497254,1497443-1497514,1497626-1497688,
1498417-1498629
Length = 542
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -1
Query: 193 CYRQMFWILRCLSLNQCYWNCRWMI-HFHHDCCNYIHKCYY 74
C+R+ W + + C C+W + H +H CC Y ++
Sbjct: 469 CWRKQRWDAKWI----C--KCKWELGHHNHSCCQYSSASFF 503
>07_01_0846 +
6873655-6873783,6875175-6875368,6875923-6876007,
6876041-6876241,6876546-6876644,6876938-6876976
Length = 248
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -1
Query: 268 FESVFWNCRWMIHFHHDCWNCIHKYCYRQMFWILRCLSLNQCYW 137
F ++ + W I F H WN + Y Q+F LSL W
Sbjct: 90 FFAIVLDVAWFILFSHAIWNITPEEKYGQLF----VLSLKLALW 129
>07_01_0752 -
5783305-5783416,5783739-5783836,5784550-5784675,
5784890-5785090,5785185-5785268,5785519-5785566,
5785709-5785763,5786130-5786185,5786281-5786365,
5786485-5786558,5787093-5787159,5788134-5788216
Length = 362
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 193 CYRQMFWILRCLSLNQCYWNCRWMIHFHHDCCNYIHK 83
CY++++ R L QC+ W I H++ N HK
Sbjct: 187 CYKEIY---RVLKPGQCFAVYEWCITDHYEPNNATHK 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,078,002
Number of Sequences: 37544
Number of extensions: 132427
Number of successful extensions: 302
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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