Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0178.Seq
(319 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8898| Best HMM Match : WSC (HMM E-Value=6.4) 37 0.003
SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085) 36 0.009
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 34 0.022
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23) 32 0.12
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 31 0.20
SB_38399| Best HMM Match : DUF81 (HMM E-Value=3.6) 30 0.35
SB_28914| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.35
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41) 27 2.5
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0) 27 3.3
SB_15037| Best HMM Match : zf-LSD1 (HMM E-Value=6.5) 27 3.3
SB_39745| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_34085| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.8
SB_57249| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.6
>SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)
Length = 165
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = -1
Query: 232 HFHHDCWNCIHKYCYRQMFWILR--CLSLNQCYWNCRWMIHFHHDCCNYIHKCYYRQMFW 59
H + C +Y Y + F ++ C CY C + ++H C Y +C +R ++
Sbjct: 28 HLYRSCHRVCRRYRYCKSFLFIKHKCHYKYHCYLKCSCKVKYYH--CRYRRRCVWRYKYY 85
Query: 58 ILRCLSLNQCYWNC 17
+ CY C
Sbjct: 86 HGKPRRYRHCYRYC 99
>SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085)
Length = 350
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = -1
Query: 232 HFHHDCWNCIHKYCY-RQMFWILRCLSLNQCYWNCRWMIHFHHDCCNYIHKCYYRQMFWI 56
H + C +Y Y + F +C CY C + ++H C Y +C +R ++
Sbjct: 92 HLYRRCHRVCRRYRYCKSYFGKHKCYYKYHCYLKCFCKVKYYH--CRYRRRCVWRYKYYH 149
Query: 55 LRCLSLNQCYWNC 17
+ CY C
Sbjct: 150 GKPRRYRHCYRYC 162
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 34.3 bits (75), Expect = 0.022
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -1
Query: 226 HHDCWNCIHKYCYRQMFWILRCLSLNQCYWNCRWMIHFHHDCCNYIHKCYYR 71
HH C C H+YCY + C + ++ C H++H C + H C YR
Sbjct: 20 HHYCCYCHHRYCYYRHHHY--CWYRHHYHYPC--YRHYYHRCYRH-HYCCYR 66
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -1
Query: 151 NQCYWNCRWMIHFHHDCCNYIHK--CYYRQMF 62
N+CY + + + HH C Y H C+YR +
Sbjct: 14 NRCYRHHHYCCYCHHRYCYYRHHHYCWYRHHY 45
>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
Length = 197
Score = 31.9 bits (69), Expect = 0.12
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = -1
Query: 247 CRWMIHFHHDCWNCIHKYCYRQMFWIL-RCLSLNQCYWNCRWMIHFHHDCCNYIHKCYYR 71
CRW + D IH C W L R ++ C CRW + D IH C
Sbjct: 115 CRWRLDRQAD----IHT-CKSTCRWRLDRQADIHTCKSTCRWRLDRQAD----IHTCKST 165
Query: 70 QMFWILRCLSLNQCYWNCQWSI 5
+ I R +++C C+W +
Sbjct: 166 CRWRINRQADIHRCKSTCRWQL 187
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 31.1 bits (67), Expect = 0.20
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -1
Query: 196 YCYRQMFWILRCLSLNQCYWNCRWMIHFHHDCCNYIHKCYY 74
YCY ++ C CY+ C ++ CC Y + CYY
Sbjct: 471 YCYCYCYYYCYCYCYYYCYYYCYCYCYY---CCYYCY-CYY 507
Score = 31.1 bits (67), Expect = 0.20
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -1
Query: 217 CWNCIHKYCYRQMFWILRCLSLNQCYWNCRWMIHFHHDCCNY 92
C+ + YCY ++ C CY+ + + H+ CC Y
Sbjct: 476 CYYYCYCYCYYYCYYYCYCYCYYCCYYCYCYYYYHHYYCCYY 517
>SB_38399| Best HMM Match : DUF81 (HMM E-Value=3.6)
Length = 388
Score = 30.3 bits (65), Expect = 0.35
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Frame = +2
Query: 20 VPVTLIQTQTAQDPEHLA---VVALMDIVTTVVMEVYH--PPAVPVTLIQTQTAKDPEHL 184
VP+ +I T ++ P H+ V+ ++ I+++ YH P + +T+I T ++ P H+
Sbjct: 43 VPIIVIITSSSDYPYHMVPIIVIIIIVIISSSSDYPYHMMPIIIIITIIITSSSDYPYHM 102
Query: 185 AVAVLMDTV 211
+++ T+
Sbjct: 103 VPIIIIITI 111
Score = 29.9 bits (64), Expect = 0.47
Identities = 13/69 (18%), Positives = 33/69 (47%)
Frame = +2
Query: 11 PLAVPVTLIQTQTAQDPEHLAVVALMDIVTTVVMEVYHPPAVPVTLIQTQTAKDPEHLAV 190
P+ + +T+I T ++ P H+ + ++ + Y +P+ +I T + P H+
Sbjct: 231 PIIIIITIIITSSSDYPYHMVPIIIIITIIITSSSDYPYHMMPIIVIITSSFDYPYHMVP 290
Query: 191 AVLMDTVPT 217
+++ + T
Sbjct: 291 IIIITIIIT 299
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +2
Query: 26 VTLIQTQTAQDPEHLA-VVALMDIVTTVVMEVYHPPAVPVTLIQTQTAKD-PEHLAVAVL 199
+T+I T ++ P H+ ++ ++ I+T+ YH A+ + + T+ D P H+ ++
Sbjct: 294 ITIIITSSSDYPYHMMQIIVIIVIITSSSDYTYHMVAIIIIITIIITSSDYPYHMVPIIV 353
Query: 200 MDTV 211
+ T+
Sbjct: 354 IITL 357
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +2
Query: 14 LAVPVTLIQTQTAQDPEHL--AVVALMDIVTTVVMEVYH--PPAVPVTLIQTQTAKDPEH 181
+ + +T+I T ++ P H+ ++ + I+T+ YH P + +T+I T ++ P H
Sbjct: 211 IIIIITIIITSSSDYPYHMMPIIIIITIIITSSSDYPYHMVPIIIIITIIITSSSDYPYH 270
Query: 182 LAVAVLMDT 208
+ +++ T
Sbjct: 271 MMPIIVIIT 279
>SB_28914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1016
Score = 30.3 bits (65), Expect = 0.35
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 196 YCYRQMFWILRCLSLNQCYWNCRWMIHFHHDCCNYIHKCYY-RQMFWILRCLSLNQCYW 23
YC Q+ + + N+CY+ + H H ++CYY Q+ + + N+CY+
Sbjct: 652 YCVNQVTHVAHLVQANECYY-VNQVTHGAH--LVQANECYYVNQVTHVAHLVQANECYY 707
>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
Length = 1682
Score = 27.5 bits (58), Expect = 2.5
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 91 IHKCYYRQMFWILRCLSLNQCYWN 20
+++CY+ FW L NQC+++
Sbjct: 1436 LYQCYFHSAFWHLYTRKENQCFFH 1459
>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 3312
Score = 27.1 bits (57), Expect = 3.3
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Frame = -1
Query: 166 RCLSLNQCYWNCRWMIHFHHDCCNYI--HKCYYRQMFWI----LRCLSLNQC--YWNCQW 11
RC+ +N+C N W H+C N I ++C R + + C L++C + C+
Sbjct: 432 RCVDINECKRNNGWC---EHECINIIGTYRCRCRDGYKLEPNRRTCQDLDECALFSGCEM 488
Query: 10 SIH 2
H
Sbjct: 489 LCH 491
>SB_15037| Best HMM Match : zf-LSD1 (HMM E-Value=6.5)
Length = 191
Score = 27.1 bits (57), Expect = 3.3
Identities = 17/81 (20%), Positives = 26/81 (32%)
Frame = -1
Query: 244 RWMIHFHHDCWNCIHKYCYRQMFWILRCLSLNQCYWNCRWMIHFHHDCCNYIHKCYYRQM 65
R +H CW C+ + YR + L R +H C + YR
Sbjct: 5 RTSVHLPPLCWGCVRVFIYRHYGGVAYECPLTAIVLGLRASVHLPPLRCGRVRVSTYRHC 64
Query: 64 FWILRCLSLNQCYWNCQWSIH 2
+ SL + S+H
Sbjct: 65 VGVACECSLTAITVGSRTSVH 85
>SB_39745| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 996
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 2 VYRPLAVPVTLIQTQTAQDPEHLAVVALMDIVTTVVMEVYH 124
VY+ L +P L QT +DP +A LM+ + V + YH
Sbjct: 172 VYKKLVLPGILEQTINCKDP--IAQEYLMECIIQVFPDEYH 210
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 104 VVMEVYHPPAVPVTLIQTQTAKDPEHLAVAVLMDTVPTVVMEVYH 238
V +VY +P L QT KDP +A LM+ + V + YH
Sbjct: 168 VTSDVYKKLVLPGILEQTINCKDP--IAQEYLMECIIQVFPDEYH 210
>SB_34085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 26.6 bits (56), Expect = 4.4
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = +2
Query: 68 LAVVALMDIVTTVVMEVYHPPAV 136
+++ AL++ + T +++ YHPPA+
Sbjct: 76 ISLEALIECICTALLDSYHPPAL 98
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -1
Query: 166 RCLSLNQCYWNCRWMIHFHHDCCNYI--HKCYYR 71
RC+ +N+C N W HDC N + ++C R
Sbjct: 2143 RCIDINECERNNGWC---EHDCINILGTYRCRCR 2173
>SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Frame = -1
Query: 256 FWNCRWMIHFHHDC--WNCIHK-YCYRQMFW---ILRCLSLNQCYWNCRWMIHFHHDCC 98
F +C HF H C C + C ++ F+ + C + + C +C W H H C
Sbjct: 57 FSSCSQSCHFLHSCPGMTCTGRDVCDQKCFFGKCDMSCHATDLCSQSCVWESHCHALTC 115
>SB_57249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/33 (30%), Positives = 12/33 (36%)
Frame = -1
Query: 175 WILRCLSLNQCYWNCRWMIHFHHDCCNYIHKCY 77
W C S W+ + H C NY K Y
Sbjct: 439 WTFVCSSCPVSLWSDKSHFEERHQCINYFEKVY 471
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,044,482
Number of Sequences: 59808
Number of extensions: 159667
Number of successful extensions: 411
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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