Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0178.Seq
(319 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X61498-1|CAA43715.1| 933|Homo sapiens NF-kB subunit protein. 31 0.98
U09609-1|AAA21462.2| 669|Homo sapiens p80HT protein. 31 0.98
S76638-1|AAB21124.1| 900|Homo sapiens p50-NF-kappa B homolog pr... 31 0.98
BT009769-1|AAP88771.1| 899|Homo sapiens nuclear factor of kappa... 31 0.98
BC002844-1|AAH02844.1| 899|Homo sapiens nuclear factor of kappa... 31 0.98
AY865619-1|AAW56071.1| 900|Homo sapiens nuclear factor of kappa... 31 0.98
AL121928-1|CAC08399.1| 900|Homo sapiens nuclear factor of kappa... 31 0.98
AJ295938-1|CAC16891.1| 260|Homo sapiens synaptobrevin like prot... 29 2.3
BC030023-1|AAH30023.1| 440|Homo sapiens glycosyltransferase 8 d... 28 6.9
>X61498-1|CAA43715.1| 933|Homo sapiens NF-kB subunit protein.
Length = 933
Score = 30.7 bits (66), Expect = 0.98
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 38 QTQTAQDPEHLAVV-ALMDIVTTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAVLMDTVP 214
Q + P HLA++ ++ +V ++H + V + + P HLAV +V
Sbjct: 483 QDENGDTPLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVV 542
Query: 215 TVVMEVYHPPAV 250
+ ++ V PA+
Sbjct: 543 SFLLRVGADPAL 554
>U09609-1|AAA21462.2| 669|Homo sapiens p80HT protein.
Length = 669
Score = 30.7 bits (66), Expect = 0.98
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 38 QTQTAQDPEHLAVV-ALMDIVTTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAVLMDTVP 214
Q + P HLA++ ++ +V ++H + V + + P HLAV +V
Sbjct: 484 QDENGDTPLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVV 543
Query: 215 TVVMEVYHPPAV 250
+ ++ V PA+
Sbjct: 544 SFLLRVGADPAL 555
>S76638-1|AAB21124.1| 900|Homo sapiens p50-NF-kappa B homolog
protein.
Length = 900
Score = 30.7 bits (66), Expect = 0.98
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 38 QTQTAQDPEHLAVV-ALMDIVTTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAVLMDTVP 214
Q + P HLA++ ++ +V ++H + V + + P HLAV +V
Sbjct: 484 QDENGDTPLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVV 543
Query: 215 TVVMEVYHPPAV 250
+ ++ V PA+
Sbjct: 544 SFLLRVGADPAL 555
>BT009769-1|AAP88771.1| 899|Homo sapiens nuclear factor of kappa
light polypeptide gene enhancer in B-cells 2 (p49/p100)
protein.
Length = 899
Score = 30.7 bits (66), Expect = 0.98
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 38 QTQTAQDPEHLAVV-ALMDIVTTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAVLMDTVP 214
Q + P HLA++ ++ +V ++H + V + + P HLAV +V
Sbjct: 484 QDENGDTPLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVV 543
Query: 215 TVVMEVYHPPAV 250
+ ++ V PA+
Sbjct: 544 SFLLRVGADPAL 555
>BC002844-1|AAH02844.1| 899|Homo sapiens nuclear factor of kappa
light polypeptide gene enhancer in B-cells 2 (p49/p100)
protein.
Length = 899
Score = 30.7 bits (66), Expect = 0.98
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 38 QTQTAQDPEHLAVV-ALMDIVTTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAVLMDTVP 214
Q + P HLA++ ++ +V ++H + V + + P HLAV +V
Sbjct: 484 QDENGDTPLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVV 543
Query: 215 TVVMEVYHPPAV 250
+ ++ V PA+
Sbjct: 544 SFLLRVGADPAL 555
>AY865619-1|AAW56071.1| 900|Homo sapiens nuclear factor of kappa
light polypeptide gene enhancer in B-cells 2 (p49/p100)
protein.
Length = 900
Score = 30.7 bits (66), Expect = 0.98
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 38 QTQTAQDPEHLAVV-ALMDIVTTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAVLMDTVP 214
Q + P HLA++ ++ +V ++H + V + + P HLAV +V
Sbjct: 484 QDENGDTPLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVV 543
Query: 215 TVVMEVYHPPAV 250
+ ++ V PA+
Sbjct: 544 SFLLRVGADPAL 555
>AL121928-1|CAC08399.1| 900|Homo sapiens nuclear factor of kappa
light polypeptide gene enhancer in B-cells 2 (p49/p100)
protein.
Length = 900
Score = 30.7 bits (66), Expect = 0.98
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 38 QTQTAQDPEHLAVV-ALMDIVTTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAVLMDTVP 214
Q + P HLA++ ++ +V ++H + V + + P HLAV +V
Sbjct: 484 QDENGDTPLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVV 543
Query: 215 TVVMEVYHPPAV 250
+ ++ V PA+
Sbjct: 544 SFLLRVGADPAL 555
>AJ295938-1|CAC16891.1| 260|Homo sapiens synaptobrevin like protein
1B protein.
Length = 260
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -1
Query: 232 HFHHDCWNCIHKY-CYRQMFWI 170
++HH NC+H Y C+ ++WI
Sbjct: 168 YYHHHRINCVHLYHCFTSLWWI 189
>BC030023-1|AAH30023.1| 440|Homo sapiens glycosyltransferase 8
domain containing 3 protein.
Length = 440
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 166 RCLSLNQCYWNCRWMIHFHHDCCNYIHKCYYRQMF 62
RC + CYWN WM+ D C C++ F
Sbjct: 74 RCKDFSLCYWNPYWML--PSDVCGM--NCFWEAAF 104
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,133,659
Number of Sequences: 237096
Number of extensions: 738597
Number of successful extensions: 1559
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1552
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1511340428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -