Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0178.Seq
(319 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125443-1|AAD12801.1| 783|Caenorhabditis elegans Hypothetical ... 31 0.18
AF025468-2|AAF02174.2| 342|Caenorhabditis elegans Serpentine re... 29 0.96
Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical pr... 28 1.7
Z83233-1|CAB05760.3| 371|Caenorhabditis elegans Hypothetical pr... 27 2.2
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 27 2.2
AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical ... 27 2.9
Z78417-9|CAI70407.1| 700|Caenorhabditis elegans Hypothetical pr... 26 5.1
AL032623-15|CAJ76975.1| 260|Caenorhabditis elegans Hypothetical... 26 5.1
AL032623-2|CAD54165.1| 312|Caenorhabditis elegans Hypothetical ... 26 5.1
AL032623-1|CAA21508.2| 309|Caenorhabditis elegans Hypothetical ... 26 5.1
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 26 6.8
Z81520-4|CAE17808.1| 181|Caenorhabditis elegans Hypothetical pr... 25 8.9
Z48809-4|CAB76413.2| 332|Caenorhabditis elegans Hypothetical pr... 25 8.9
Z22179-5|CAA80162.2| 786|Caenorhabditis elegans Hypothetical pr... 25 8.9
U49956-2|AAO38616.1| 136|Caenorhabditis elegans Dauer or aging ... 25 8.9
>AF125443-1|AAD12801.1| 783|Caenorhabditis elegans Hypothetical
protein H32C10.3 protein.
Length = 783
Score = 31.1 bits (67), Expect = 0.18
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -1
Query: 205 IHKYCYRQMFWILRCLSLNQCYWNCRWMIHFHHDCCNYIHKCYYRQMF--WILRCLSL 38
I +YC+ WI + S + C + + F H C +IHKC YR+ ++ CL++
Sbjct: 539 IDRYCFT--CWIPKTSSSHHCSQCDKCVDGFDHHC-PWIHKCVYRKNLRAFVFFCLTI 593
>AF025468-2|AAF02174.2| 342|Caenorhabditis elegans Serpentine
receptor, class h protein308 protein.
Length = 342
Score = 28.7 bits (61), Expect = 0.96
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 68 LAVVALMDIVTTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAVLMDT-VPTVVMEV 232
+A++A ++I+ V+ VY+ VP + +T ++ VAV++ T VP +++ V
Sbjct: 218 MALIATVNILIHVICLVYYLYVVPPRTLSKETRQNQRVFLVAVVLQTSVPLMLIIV 273
>Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical
protein ZK1010.5 protein.
Length = 756
Score = 27.9 bits (59), Expect = 1.7
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +2
Query: 23 PVTLIQTQTAQDPEHLAVVALMDIVTTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAVLM 202
PV ++ T+++P V +M PP PV + TAKDP ++
Sbjct: 494 PVVIVDPATSEEPNDTTVAQVM------------PPNPPVVISGPATAKDPSTTTSDPVV 541
Query: 203 DTVPTVVM 226
T P VV+
Sbjct: 542 QTNPPVVI 549
>Z83233-1|CAB05760.3| 371|Caenorhabditis elegans Hypothetical
protein K06B4.1 protein.
Length = 371
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -1
Query: 211 NCI--HKYCYRQMFWILRCLSLNQCYWNCRWMIHFHHDCCNYIHKCY 77
NC+ H+ Q + +L C + + R ++ H CC +KCY
Sbjct: 4 NCLICHRKAAGQHYGVLSCFACKMFFH--RMVVENLHYCCQKFNKCY 48
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = +2
Query: 47 TAQDPEHLAVVALMDIVTTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAVLMDTVPTVVM 226
T + V A+ + TTV+ EV P T ++ T K A A + PT
Sbjct: 225 TLASEDETTVTAIAESTTTVIAEVSTTTEEPTTTAESTTKKSTTK-APATTEEPTPTTTE 283
Query: 227 EV 232
EV
Sbjct: 284 EV 285
>AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical
protein C45H4.13 protein.
Length = 349
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +2
Query: 11 PLAVPVTLIQTQTAQDPEHLAVVALMDIVTTVVMEVYHPPAVPVTLIQTQTAKDPEHLAV 190
P +P+ + T + + +A MD+VTT+++ + + + +I A D LAV
Sbjct: 130 PATLPILQVTIATIMEAITIMDIATMDMVTTIIITL----EIIIVVIHIDRAGDKVTLAV 185
Query: 191 AVLMDT 208
++ T
Sbjct: 186 ETVIIT 191
>Z78417-9|CAI70407.1| 700|Caenorhabditis elegans Hypothetical
protein C35C5.11 protein.
Length = 700
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = -1
Query: 193 CYRQMFWILRCLSLNQCYWNCRWMIHFHH 107
C + W+ R SL+ +W R I +H
Sbjct: 502 CLSLIIWVFRWFSLSHHHWTARLFIPSYH 530
>AL032623-15|CAJ76975.1| 260|Caenorhabditis elegans Hypothetical
protein Y43F8B.1c protein.
Length = 260
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 119 YHPPAVPVTLIQTQTAKDPEHLAVAVLMDTVPTVVMEVYHPPAVPEH 259
+ P +PV A+ E V VL +PT ME PP P++
Sbjct: 179 FGPQHMPVVQWPPPEAEAHEREQVEVLQKHIPTKKMERQWPPPPPQY 225
>AL032623-2|CAD54165.1| 312|Caenorhabditis elegans Hypothetical
protein Y43F8B.1b protein.
Length = 312
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 119 YHPPAVPVTLIQTQTAKDPEHLAVAVLMDTVPTVVMEVYHPPAVPEH 259
+ P +PV A+ E V VL +PT ME PP P++
Sbjct: 228 FGPQHMPVVQWPPPEAEAHEREQVEVLQKHIPTKKMERQWPPPPPQY 274
>AL032623-1|CAA21508.2| 309|Caenorhabditis elegans Hypothetical
protein Y43F8B.1a protein.
Length = 309
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 119 YHPPAVPVTLIQTQTAKDPEHLAVAVLMDTVPTVVMEVYHPPAVPEH 259
+ P +PV A+ E V VL +PT ME PP P++
Sbjct: 228 FGPQHMPVVQWPPPEAEAHEREQVEVLQKHIPTKKMERQWPPPPPQY 274
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
F40H6.5 protein.
Length = 1288
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/38 (31%), Positives = 15/38 (39%)
Frame = +2
Query: 95 VTTVVMEVYHPPAVPVTLIQTQTAKDPEHLAVAVLMDT 208
+ TV M PP P T T T P+ + L T
Sbjct: 1142 IDTVSMACVRPPTTPTTTTSTTTTTTPKLTTTSTLPST 1179
>Z81520-4|CAE17808.1| 181|Caenorhabditis elegans Hypothetical
protein F31B9.4 protein.
Length = 181
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/43 (27%), Positives = 17/43 (39%)
Frame = +2
Query: 128 PAVPVTLIQTQTAKDPEHLAVAVLMDTVPTVVMEVYHPPAVPE 256
PA +T T T P ++ T TV PP +P+
Sbjct: 35 PAPNITTTTTTTTIAPPTNTTTTILTTTTTVTTTTTSPPLIPD 77
>Z48809-4|CAB76413.2| 332|Caenorhabditis elegans Hypothetical
protein T01E8.7 protein.
Length = 332
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 20 VPVTLIQTQTAQDPEHLAVVALMDIVTTVVMEVYHPPAVPVTL 148
+ V+L AQ L +++L +++T+VM + H P TL
Sbjct: 259 IQVSLEYHNQAQTNISLCLLSLHGLISTIVMLIVHKPYRDATL 301
>Z22179-5|CAA80162.2| 786|Caenorhabditis elegans Hypothetical
protein F58A4.5 protein.
Length = 786
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 95 VTTVVMEVYHPPAVPVTLIQTQTAKDP 175
+TT++ V P A+P+ ++ Q+ KDP
Sbjct: 522 LTTIITTV-KPNALPIAIVAKQSEKDP 547
>U49956-2|AAO38616.1| 136|Caenorhabditis elegans Dauer or aging
adult overexpressionprotein 2 protein.
Length = 136
Score = 25.4 bits (53), Expect = 8.9
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -1
Query: 139 WNCRWMIHFHHDCC 98
W+C + H H DCC
Sbjct: 70 WDCASLRHNHEDCC 83
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,977,743
Number of Sequences: 27780
Number of extensions: 120388
Number of successful extensions: 307
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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