Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0178.Seq
         (319 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    29   0.018
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    29   0.018
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   3.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   3.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.7  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   4.7  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   4.7  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 28.7 bits (61), Expect = 0.018
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 217 CWNCIHKYCYRQMFWILRCLS-LNQCYWNCRWMIHFHHDCCNYIHKCYYRQMFWILR 50
           C NCIH   +  +FW+  C S +N C +   +   F     + I KC+ ++    LR
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIY-ALFSKDFRFAFKSIICKCFCKRRTNTLR 90



 Score = 24.2 bits (50), Expect = 0.39
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -1

Query: 103 CCNYIHKCYYRQMFWILRCLS-LNQCYW 23
           C N IH   +  +FW+  C S +N C +
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIY 62


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 0.018
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 217 CWNCIHKYCYRQMFWILRCLS-LNQCYWNCRWMIHFHHDCCNYIHKCYYRQMFWILR 50
           C NCIH   +  +FW+  C S +N C +   +   F     + I KC+ ++    LR
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIY-ALFSKDFRFAFKSIICKCFCKRRTNTLR 538



 Score = 24.2 bits (50), Expect = 0.39
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -1

Query: 103 CCNYIHKCYYRQMFWILRCLS-LNQCYW 23
           C N IH   +  +FW+  C S +N C +
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIY 510


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 9/41 (21%), Positives = 16/41 (39%)
 Frame = -1

Query: 316 PIVLXPPYVLDRXMFEFESVFWNCRWMIHFHHDCWNCIHKY 194
           PI +   Y       E    +W     I+ HH  W+ ++ +
Sbjct: 178 PIEIPRDYTASDLDVEHRVAYWREDIGINLHHWHWHLVYPF 218


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = -1

Query: 271 EFESV-FWNCRWMIHFHHDCWNCIHKY 194
           EF+ +    C   +    D WNC+ +Y
Sbjct: 511 EFQKIELKQCDEFVEDSDDYWNCVIQY 537


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 11/38 (28%), Positives = 13/38 (34%)
 Frame = -1

Query: 247 CRWMIHFHHDCWNCIHKYCYRQMFWILRCLSLNQCYWN 134
           CR+  H    C  C    C  +M     C   N   WN
Sbjct: 737 CRYEAHCFALCHCCDFDACDCEMTCPAGCKCYNDRTWN 774


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 196 YCYRQMFWILRCLSLNQCY 140
           YC R+ +   R ++L+ CY
Sbjct: 92  YCCRESYLKERHITLHHCY 110


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 196 YCYRQMFWILRCLSLNQCY 140
           YC R+ +   R ++L+ CY
Sbjct: 92  YCCRESYLKERHITLHHCY 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,429
Number of Sequences: 438
Number of extensions: 1404
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)