Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0178.Seq
         (319 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein...    31   0.17 
At3g61670.1 68416.m06911 expressed protein weak similarity to ex...    27   2.1  
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    27   3.6  
At1g67710.1 68414.m07727 two-component responsive regulator fami...    27   3.6  
At1g69280.1 68414.m07943 expressed protein                             26   4.8  
At1g64260.1 68414.m07281 zinc finger protein-related contains Pf...    26   4.8  
At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger) fa...    26   6.3  
At3g24535.1 68416.m03081 expressed protein ; expression supporte...    25   8.3  

>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 257

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = -1

Query: 250 NCRWMIHFHHDCWNC-IHKYCYRQMFWILRCLSLNQCYWNCRWMIHFHHDCCN--YIHKC 80
           NC+   HF  DC N  +   C         C + ++C WNCR   H   +C N    H C
Sbjct: 59  NCKRPGHFARDCSNVSVCNNCGLPGHIAAECTAESRC-WNCREPGHVASNCSNEGICHSC 117


>At3g61670.1 68416.m06911 expressed protein weak similarity to
           extra-large G-protein [Arabidopsis thaliana] GI:3201682
          Length = 790

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 232 HFHHDCWNCIHKYCYRQMFW 173
           HFHH   +C H  CY   +W
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339


>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 26/82 (31%), Positives = 29/82 (35%), Gaps = 3/82 (3%)
 Frame = +2

Query: 11  PLAVPVTLIQTQTAQDPEHLA---VVALMDIVTTVVMEVYHPPAVPVTLIQTQTAKDPEH 181
           P A PVT   T TA  P   A     A     TT  +    PPA PVT     T   P  
Sbjct: 27  PAASPVT--STTTAPPPTTAAPPTTAAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPA 84

Query: 182 LAVAVLMDTVPTVVMEVYHPPA 247
             VA ++            PPA
Sbjct: 85  PKVAPVISPATPPPQPPQSPPA 106


>At1g67710.1 68414.m07727 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver
           domain; contains similarity to response regulator
           proteins from [Arabidopsis thaliana]
          Length = 521

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 29  TLIQTQTAQDPEHLAVVALMDIVTTVVM 112
           +LIQ  T  DP+ LA  +L D+ T V+M
Sbjct: 296 SLIQKATEIDPKPLASASLSDLNTDVIM 323


>At1g69280.1 68414.m07943 expressed protein
          Length = 400

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = -1

Query: 247 CRWMIHFHHD-CWNCIHKYCYRQMFWILRCLSLNQCYWNCRWMIHFHHDCCNYIHKCYYR 71
           C W+   +   C++C         F+  + L    C+  CRW    ++  C ++  C++ 
Sbjct: 300 CSWLCCKNTGPCFSCCRLPSCGYNFFCCKRLKCCPCFSWCRWPSCDYNSSCGWLFCCHW- 358

Query: 70  QMFWILRCLS 41
              W   C S
Sbjct: 359 -SCWSCCCCS 367


>At1g64260.1 68414.m07281 zinc finger protein-related contains Pfam
           profiles PF03108: MuDR family transposase, PF04434: SWIM
           zinc finger
          Length = 719

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 286 DRXMFEFESVFWNCRWMI 233
           ++ M+ FE V W C+W +
Sbjct: 218 EKEMYTFECVRWKCKWSL 235


>At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 193

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 226 HHDCWNCIHKYCY 188
           H  CW CIHK+ Y
Sbjct: 38  HLFCWPCIHKWTY 50


>At3g24535.1 68416.m03081 expressed protein ; expression supported
           by MPSS
          Length = 188

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 68  LAVVALMDIVTTVVMEVYHPPAVPVTLIQTQTAKDPEHLAV 190
           L   A +D+V    MEVY     P  L+ T+TA    + AV
Sbjct: 137 LRYTAYLDVVENFFMEVYSDFFSPHHLVGTRTAVQRRYPAV 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,587,707
Number of Sequences: 28952
Number of extensions: 104702
Number of successful extensions: 237
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)