Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0176.Seq
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide...    27   1.4  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    27   2.4  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   3.1  
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   4.1  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    26   4.1  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   9.5  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       25   9.5  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    25   9.5  

>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
           synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 466 QYKRNRKDAKNLANTXSLPMPEQEIE 543
           QY RN   A NLAN  ++ +PE  +E
Sbjct: 254 QYLRNWLTANNLANKPNVSLPEDVVE 279


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 352  PRSQADIDYELKVRKFLEMTKEDSXYEEKVRNFLA 456
            P +   ++  L+  K L+  K+D  Y  +VR+F A
Sbjct: 1360 PEAYLQLEELLQTSKILQFVKDDPNYVARVRDFYA 1394


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +1

Query: 367 DIDYELKVRKF--LEMTKEDSXYEEKVRNFLAETTQYKRNRKDAKNLANTXSLPM 525
           D+  E+   KF  L+  K+++    ++ NF +   Q+K N+KD   +AN  SL M
Sbjct: 471 DVRLEVPSGKFSLLKYPKKENVISLELLNFFS---QFKCNKKDYSFVANLGSLKM 522


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 217 SPLSKRMAMLGDGILHLGLTIRNSTIRTDIKP 312
           +P  + + ++GDG LHL +   ++TIR  + P
Sbjct: 440 APHRRSILIVGDGSLHLTVQEISATIRNGLTP 471


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 301 DIKPPVQTADDIAAQPPPRSQADIDYELKVRK 396
           D+    Q +    AQ PP  Q+DI  +L+++K
Sbjct: 689 DLPSSSQISSSALAQLPPSMQSDIQQQLRLQK 720


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 170 RRSVVLNPTTKGSALCHR*ASAWR 241
           R+S+  +P++KGS +C R   A++
Sbjct: 4   RKSISKSPSSKGSTVCFRCGQAFQ 27


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 252 WDSTSRTHNSQFNHPYGYQASSANRGRHRRPAPAA 356
           +D   R H S+          S +R R RRP+P+A
Sbjct: 189 YDDDDRDHRSRRRSRSRRPGRSRSRRRSRRPSPSA 223


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 220 PLSKRMAMLGDGILHLGLTIRNSTIRTDIKP 312
           P  + + ++GDG L L +T  ++ IR ++KP
Sbjct: 440 PDRRTILVVGDGSLQLTITEISTCIRHNLKP 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.130    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,487,819
Number of Sequences: 5004
Number of extensions: 25525
Number of successful extensions: 77
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)