Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0176.Seq
         (543 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986...    33   0.15 
03_06_0771 - 36152554-36153215,36153320-36153818,36153924-36153956     29   3.2  
02_04_0055 - 19290975-19292312                                         28   5.5  
01_06_0846 + 32408333-32408484,32408560-32408926,32409021-324093...    28   5.5  
05_01_0152 + 1008642-1008719,1008797-1009300                           27   9.7  
03_01_0259 - 1996427-1998772                                           27   9.7  
02_01_0742 + 5524149-5524214,5524609-5524641,5524750-5524880,552...    27   9.7  

>01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,
            9863016-9863674,9863749-9863852,9863950-9864192,
            9864262-9864376,9864696-9864909,9864995-9865511,
            9866439-9866448,9867363-9867551,9867755-9868084,
            9868639-9868872,9869303-9869743
          Length = 1171

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 310  PPVQTADDIAAQPPPRSQADIDYELKVRKFLEM 408
            PP++  DD++ Q PPR+ AD+   +K +  LEM
Sbjct: 1072 PPLEEPDDVSGQLPPRNGADLTGGVKEKVDLEM 1104


>03_06_0771 - 36152554-36153215,36153320-36153818,36153924-36153956
          Length = 397

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 274 TIRNSTIRTDIKPPVQTADDIAAQPPPR 357
           T+RN+T+ +   PP  T D    QP PR
Sbjct: 113 TLRNATVISPPPPPTSTEDQDQHQPSPR 140


>02_04_0055 - 19290975-19292312
          Length = 445

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 412 WSSRGTCAPSTHSQYQPETAA 350
           W+SRG  A   H Q QP  AA
Sbjct: 215 WASRGGSAAGAHEQQQPRAAA 235


>01_06_0846 +
           32408333-32408484,32408560-32408926,32409021-32409301,
           32409877-32409931,32410137-32410331,32410417-32410569
          Length = 400

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 310 PPVQTADDIAAQPPPRSQA 366
           PPVQT D   A PPP ++A
Sbjct: 233 PPVQTQDQAQATPPPDTRA 251


>05_01_0152 + 1008642-1008719,1008797-1009300
          Length = 193

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 204 AALSVTAEQAHGDAR*WDSTSRTHNSQFNHPYGYQASSANRGRHRRP 344
           +A +V A    GD R W    R    +     G  A++  R R RRP
Sbjct: 124 SAAAVAAVSGSGDCRRWRMRRRGRRGEVGMAAGKDAATGVRTRCRRP 170


>03_01_0259 - 1996427-1998772
          Length = 781

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +2

Query: 101 PVLVPHRI---HHLHHQIRVIQKVLGRRSVV 184
           P+LV   +   +H HH +++I +  GRR VV
Sbjct: 731 PILVKKNVRICNHCHHALKLISRYSGRRIVV 761


>02_01_0742 +
           5524149-5524214,5524609-5524641,5524750-5524880,
           5525174-5525282,5525406-5525522,5525896-5525961,
           5526314-5526376,5526459-5526503,5526690-5526751,
           5526974-5527067,5527375-5527467,5527561-5527630,
           5527816-5527892,5527976-5528033,5528135-5528166,
           5528245-5528376
          Length = 415

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +1

Query: 232 RMAMLGDGILHLGLTIRNSTIRTDIKPPVQTADDIAAQPPPRSQADIDYELKVRKFLEM 408
           ++A L  G      T R    +T   PP        A  PP+ Q   D+E KV K +E+
Sbjct: 332 KLASLSQGAAGESSTARE---KTPDAPPRAPTTGAPAVNPPQPQGGGDFEAKVTKLVEL 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.130    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,671,885
Number of Sequences: 37544
Number of extensions: 206633
Number of successful extensions: 673
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)