Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0176.Seq
(543 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14606| Best HMM Match : efhand (HMM E-Value=0.00036) 29 3.2
SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_42883| Best HMM Match : PT (HMM E-Value=0.21) 28 5.7
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 28 5.7
SB_58080| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_52855| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41) 27 9.9
SB_57757| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_46938| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_45596| Best HMM Match : rve (HMM E-Value=1.8e-07) 27 9.9
SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37) 27 9.9
>SB_14606| Best HMM Match : efhand (HMM E-Value=0.00036)
Length = 633
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 271 VRDVESHHRASPCACSAVTES-AAFCCW-IENDASS 170
+RDVES + SP +C A ES + C W I +D S
Sbjct: 275 IRDVESKKKTSPSSCRARGESRCSDCIWSITHDTYS 310
>SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 777
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 86 HRVTRPVLVPHRIHHLHHQIRV 151
HRVTRPV+V R + ++H + V
Sbjct: 478 HRVTRPVMVEWRANPIYHLLNV 499
>SB_42883| Best HMM Match : PT (HMM E-Value=0.21)
Length = 134
Score = 27.9 bits (59), Expect = 5.7
Identities = 20/87 (22%), Positives = 38/87 (43%)
Frame = +1
Query: 280 RNSTIRTDIKPPVQTADDIAAQPPPRSQADIDYELKVRKFLEMTKEDSXYEEKVRNFLAE 459
R S + I+ Q + A QP + + D +L ++ + T E R ++E
Sbjct: 9 RTSQTTSYIQTTSQPNNQSARQPVRLTTSQPDNQLSRKRASQTTSYPD--NETARQPVSE 66
Query: 460 TTQYKRNRKDAKNLANTXSLPMPEQEI 540
TT N ++ + T S P P++++
Sbjct: 67 TTSQPDNEPASQTVIKTTSQPSPDRQL 93
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 77 HHRHRVTRPVLVPHRIHHLHH 139
HH H ++ ++ HR HH HH
Sbjct: 156 HHHHPLSIAIIHRHRHHHHHH 176
>SB_58080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 27.5 bits (58), Expect = 7.5
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = +1
Query: 229 KRMAMLGDGILHLGLTIRNSTIRTDIKPPVQTADDIAAQPPPRSQADIDYELKVRKFLEM 408
KRM G G + L+ N ++ +D+ A ++ + P +++AD DYE ++ L
Sbjct: 215 KRMER-GQGSSYSSLSSANESVFSDLGGLSDAAFEVFS--PVQTEADFDYENDTKRDLSR 271
Query: 409 TKEDSXYEEK 438
T + Y++K
Sbjct: 272 TNK-KKYQDK 280
>SB_52855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 77 HHRHRVTRPVLVPHRIHHLHHQIRVIQKVLGRR--SVVLNPTT 199
HHRH T V+ P HHLH I + R ++V++P++
Sbjct: 48 HHRH--TTIVISPSSYHHLHTTIVISPSSYHHRHITIVISPSS 88
>SB_56821| Best HMM Match : His_leader (HMM E-Value=0.41)
Length = 131
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 77 HHRHRVTRPVLVPHRIHHLHH 139
HH HR + + V H HH HH
Sbjct: 53 HHHHR--QHITVHHHYHHYHH 71
>SB_57757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 59
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 74 AHHRHRVTRPVLVPH 118
A HRHR RP L PH
Sbjct: 32 ARHRHRPVRPTLPPH 46
>SB_46938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +1
Query: 403 EMTKEDSXYEEKVRNFLAETTQYKRNRKDAKN 498
+M ++ YE+ + + A+ +Y+R +DA+N
Sbjct: 3 QMRATNAQYEKLIEEYKAQIDKYRREAEDARN 34
>SB_45596| Best HMM Match : rve (HMM E-Value=1.8e-07)
Length = 882
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 214 LSPLSKRMAMLGDGILHLGLTIRNST 291
+SPL K + DGI+H+G + ST
Sbjct: 604 VSPLRKLQPFVADGIIHVGGRLERST 629
>SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)
Length = 1219
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 265 LGLTIRNSTIR-TDIKPPVQTADDIAAQPPPRSQADIDYELKVRKFL 402
L L I+ + R DI+PP +TAD A P D+ ++ V K L
Sbjct: 795 LDLPIQATRCRLADIQPPGETADPSAGSSWPEKTKDVLIQIVVGKTL 841
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.312 0.130 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,846,448
Number of Sequences: 59808
Number of extensions: 231620
Number of successful extensions: 571
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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