Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0176.Seq
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40029-10|AAN65326.1|  644|Caenorhabditis elegans Hypothetical p...    32   0.31 
U40029-9|AAN65325.1|  727|Caenorhabditis elegans Hypothetical pr...    32   0.31 
Z50872-7|CAJ55249.1| 1001|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z50872-6|CAH10768.1| 1039|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    27   6.6  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    27   6.6  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    27   6.6  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    27   6.6  

>U40029-10|AAN65326.1|  644|Caenorhabditis elegans Hypothetical
           protein F10G7.9b protein.
          Length = 644

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +1

Query: 304 IKPPVQTADDIAAQPPPRSQADIDYELKVRKFLEMTKEDSXYEEKVRNFLAETTQYKRNR 483
           IKPP+Q   +     P  S+A I+ E  +R+ L    + S      ++   E T  KR R
Sbjct: 137 IKPPIQIPLEAVVSLPSTSKAVIEDESSLREMLLSQLKQSKKRNAEKSSSQEKTP-KRVR 195

Query: 484 KDAKNLANT 510
           K++  L+N+
Sbjct: 196 KNSSRLSNS 204


>U40029-9|AAN65325.1|  727|Caenorhabditis elegans Hypothetical
           protein F10G7.9a protein.
          Length = 727

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +1

Query: 304 IKPPVQTADDIAAQPPPRSQADIDYELKVRKFLEMTKEDSXYEEKVRNFLAETTQYKRNR 483
           IKPP+Q   +     P  S+A I+ E  +R+ L    + S      ++   E T  KR R
Sbjct: 220 IKPPIQIPLEAVVSLPSTSKAVIEDESSLREMLLSQLKQSKKRNAEKSSSQEKTP-KRVR 278

Query: 484 KDAKNLANT 510
           K++  L+N+
Sbjct: 279 KNSSRLSNS 287


>Z50872-7|CAJ55249.1| 1001|Caenorhabditis elegans Hypothetical
           protein C05D12.3c protein.
          Length = 1001

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +1

Query: 226 SKRMAMLGDGILHLGLTIRNSTIRTDIKPPVQT 324
           S  M  +G+GI+HLG+T+ +STIRT   P  Q+
Sbjct: 386 SDMMIDVGNGIVHLGVTM-HSTIRTFGFPEFQS 417


>Z50872-6|CAH10768.1| 1039|Caenorhabditis elegans Hypothetical
           protein C05D12.3a protein.
          Length = 1039

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +1

Query: 226 SKRMAMLGDGILHLGLTIRNSTIRTDIKPPVQT 324
           S  M  +G+GI+HLG+T+ +STIRT   P  Q+
Sbjct: 386 SDMMIDVGNGIVHLGVTM-HSTIRTFGFPEFQS 417


>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
            protein.
          Length = 4280

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = -3

Query: 478  YVCIALFQRGSYELFLHSXNLLWSSRGTCAPSTHSQYQPETAAGAGRRCRPRFAL 314
            ++ + +  R SY ++  + +   S++ +C+P TH+    + AA      R ++AL
Sbjct: 975  FIHVQVLDRNSYVMYTSAQS---SAKSSCSPPTHTPSHLQVAAPDASHVRVQWAL 1026


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = -3

Query: 478  YVCIALFQRGSYELFLHSXNLLWSSRGTCAPSTHSQYQPETAAGAGRRCRPRFAL 314
            ++ + +  R SY ++  + +   S++ +C+P TH+    + AA      R ++AL
Sbjct: 975  FIHVQVLDRNSYVMYTSAQS---SAKSSCSPPTHTPSHLQVAAPDASHVRVQWAL 1026


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = -3

Query: 478  YVCIALFQRGSYELFLHSXNLLWSSRGTCAPSTHSQYQPETAAGAGRRCRPRFAL 314
            ++ + +  R SY ++  + +   S++ +C+P TH+    + AA      R ++AL
Sbjct: 975  FIHVQVLDRNSYVMYTSAQS---SAKSSCSPPTHTPSHLQVAAPDASHVRVQWAL 1026


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
            805, isoform a protein.
          Length = 4280

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = -3

Query: 478  YVCIALFQRGSYELFLHSXNLLWSSRGTCAPSTHSQYQPETAAGAGRRCRPRFAL 314
            ++ + +  R SY ++  + +   S++ +C+P TH+    + AA      R ++AL
Sbjct: 975  FIHVQVLDRNSYVMYTSAQS---SAKSSCSPPTHTPSHLQVAAPDASHVRVQWAL 1026


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.312    0.130    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,541,408
Number of Sequences: 27780
Number of extensions: 159188
Number of successful extensions: 441
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)