Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0176.Seq
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   0.87 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   6.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   6.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   6.1  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 0.87
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 77  HHRH--RVTRPVLVPHRIHHLHHQIRVIQKVLGRRSVVLN 190
           HH+H      P + P   HH HHQ + +Q +  R+   L+
Sbjct: 335 HHQHGNHTMGPTMGPPHHHH-HHQTQSLQHLHYRQPPTLS 373


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 537 FLFRHWKAACVGQV 496
           FLFR W++  VG +
Sbjct: 304 FLFRAWESIIVGMI 317


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 312 SSANRGRHRRPAPA 353
           S AN  RH RP PA
Sbjct: 391 SVANELRHSRPVPA 404


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 312 SSANRGRHRRPAPA 353
           S AN  RH RP PA
Sbjct: 391 SVANELRHSRPVPA 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.130    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,547
Number of Sequences: 438
Number of extensions: 1837
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)