Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0176.Seq
(543 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low... 31 0.50
At5g44740.1 68418.m05483 UMUC-like DNA repair family protein low... 31 0.50
At1g60220.1 68414.m06782 Ulp1 protease family protein contains P... 28 3.5
At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger) fa... 27 6.1
At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger) fa... 27 6.1
At3g10530.1 68416.m01264 transducin family protein / WD-40 repea... 27 6.1
At1g29220.1 68414.m03574 transcriptional regulator family protei... 27 6.1
At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein ... 27 8.1
>At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low
similarity to DNA polymerase eta [Homo sapiens]
GI:11463971; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 672
Score = 31.1 bits (67), Expect = 0.50
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 325 ADDIAAQPPPRSQADIDYELKVRKFLEMTKED-SXYEEKVRNFLAETTQYKRNR 483
A+ + A PP S ID E+ L M +ED ++E VRN++ +R++
Sbjct: 130 AESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRDK 183
>At5g44740.1 68418.m05483 UMUC-like DNA repair family protein low
similarity to DNA polymerase eta [Homo sapiens]
GI:11463971; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 588
Score = 31.1 bits (67), Expect = 0.50
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 325 ADDIAAQPPPRSQADIDYELKVRKFLEMTKED-SXYEEKVRNFLAETTQYKRNR 483
A+ + A PP S ID E+ L M +ED ++E VRN++ +R++
Sbjct: 46 AESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADRRDK 99
>At1g60220.1 68414.m06782 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 604
Score = 28.3 bits (60), Expect = 3.5
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 271 LTIRNSTIRTDIKPPVQTADDIAAQPPPRSQADIDYELKVRK-FLEMTKEDSXYEEKVRN 447
L I N+T T PP +DD P + D+D +L+ +K L + EK+R
Sbjct: 36 LEIVNTTKPTPPPPPTFFSDDQTDSPKLLTDRDLDEQLERKKAILTLGPGLPDKGEKIRL 95
Query: 448 FLAETTQYKRNR 483
+A+ + K+ R
Sbjct: 96 KIADLEEEKQRR 107
>At3g54780.2 68416.m06062 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 676
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Frame = -2
Query: 326 AVCTGGLISVRMVELRI----VSPRCRIPS 249
A C GGL+SV + ELR+ VSP R+ S
Sbjct: 411 AQCIGGLLSVAVQELRVEIEGVSPNVRLSS 440
>At3g54780.1 68416.m06061 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 675
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Frame = -2
Query: 326 AVCTGGLISVRMVELRI----VSPRCRIPS 249
A C GGL+SV + ELR+ VSP R+ S
Sbjct: 410 AQCIGGLLSVAVQELRVEIEGVSPNVRLSS 439
>At3g10530.1 68416.m01264 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400); BING4
(gi:3811380) {Mus musculus]; similar to hypothetical
protein GB:P40055 [Saccharomyces cerevisiae]
Length = 536
Score = 27.5 bits (58), Expect = 6.1
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +1
Query: 346 PPPRSQADIDYELKVRKFL--EMTKEDSXYEEKVRNFLAETTQYKRNRKDAKNLANTXSL 519
PP ++D++ E KV+K+L E ++ ++K++ LA ++ K K AK A
Sbjct: 16 PPVEQESDVELETKVKKYLRGEGANLETLKDKKLKTQLA--SREKLYGKSAKAAAKIEKW 73
Query: 520 PMPEQ 534
+P +
Sbjct: 74 LLPAE 78
>At1g29220.1 68414.m03574 transcriptional regulator family protein
similar to Transcriptional regulator protein HCNGP
(Swiss-Prot:Q02614) [Mus musculus]
Length = 351
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 346 PPPRSQADIDYELKVRKFLEMTKEDSXYEEKVRN 447
P PR + + + K+ KFL + K + +VRN
Sbjct: 135 PRPRERCSEELQRKIDKFLSLKKMGKSFNSEVRN 168
>At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 503
Score = 27.1 bits (57), Expect = 8.1
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 214 LSPLSKRMAMLGDGILHLGLTIRNS-TIRTDIKPPVQTADDIAAQPPPRSQADIDYELKV 390
LSP+S A+L +G T NS T + P T+ A PPPRS + + + ++
Sbjct: 366 LSPMSAT-ALLQKAA-QMGSTRSNSSTAPSFFAGPTMTSSSATASPPPRSSSPMMIQQQL 423
Query: 391 RKF 399
F
Sbjct: 424 NNF 426
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.312 0.130 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,093,239
Number of Sequences: 28952
Number of extensions: 147246
Number of successful extensions: 368
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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