Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0175.Seq
         (538 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9CE52 Cluster: ABC transporter permease protein; n=3; ...    33   4.2  
UniRef50_A4XHM9 Cluster: Putative uncharacterized protein; n=1; ...    33   4.2  
UniRef50_Q171A5 Cluster: Putative uncharacterized protein; n=1; ...    33   5.5  
UniRef50_UPI0000E4A260 Cluster: PREDICTED: hypothetical protein,...    32   9.6  
UniRef50_Q7RG50 Cluster: Putative uncharacterized protein PY0449...    32   9.6  

>UniRef50_Q9CE52 Cluster: ABC transporter permease protein; n=3;
           Lactococcus lactis|Rep: ABC transporter permease protein
           - Lactococcus lactis subsp. lactis (Streptococcus
           lactis)
          Length = 339

 Score = 33.1 bits (72), Expect = 4.2
 Identities = 27/75 (36%), Positives = 38/75 (50%)
 Frame = -1

Query: 526 KYYEYLNYDWFCQYLFLIITQGQFLVVNQIFFLVDHTITFTGS*IIKILLSNLF*IIGNI 347
           KY  Y+  D F   LFL+I  G  LVV  I FL  H +   G  I+ IL+S    I+G +
Sbjct: 18  KYLRYVFNDHFV--LFLMILLGA-LVVQYINFLQIHQLNLWGKIILVILISLASQIVGRL 74

Query: 346 SLGFAFITTTTRILL 302
           +    FI +  ++ L
Sbjct: 75  A---TFIESPDKVFL 86


>UniRef50_A4XHM9 Cluster: Putative uncharacterized protein; n=1;
           Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
           Putative uncharacterized protein - Caldicellulosiruptor
           saccharolyticus (strain ATCC 43494 / DSM 8903)
          Length = 103

 Score = 33.1 bits (72), Expect = 4.2
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = -1

Query: 460 QFLVVNQIFFLVDHTITFTGS*IIKILLSNLF*IIGNISLGFAFITTTTRILLAAFCFG 284
           + L + +IFF +   +   GS I  IL  N F I+G I LG  F+      +L  F FG
Sbjct: 10  KLLRIYRIFFYILVILATIGSVISSILEKNAFYIVGTIVLG-VFLILIVEFILFPFVFG 67


>UniRef50_Q171A5 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 481

 Score = 32.7 bits (71), Expect = 5.5
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = +3

Query: 147 RNTISVTVVFHGPAVGSLNSSELHLYTYIQKIVLCCLGTPHQILFTPKQNAASKILVVVV 326
           RN++S  V +   A  SLN   + L  Y+  + L   G   ++         + ++V   
Sbjct: 50  RNSLSSYVRYPPTASPSLNEGAITLRDYVGNVSLLAGGVYSEVSRAATDRTTAPVVVFSK 109

Query: 327 INAKPNEMLPIIQN 368
           I  + N++ P++QN
Sbjct: 110 IRTRLNDLQPLLQN 123


>UniRef50_UPI0000E4A260 Cluster: PREDICTED: hypothetical protein,
           partial; n=5; Strongylocentrotus purpuratus|Rep:
           PREDICTED: hypothetical protein, partial -
           Strongylocentrotus purpuratus
          Length = 718

 Score = 31.9 bits (69), Expect = 9.6
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +2

Query: 29  ISKSYIG*MFNGESKLHFPIKSKTNHLHWSQLISYLIIKKKYYQ-CYCCVPWSRSRIT*L 205
           ++K ++  ++   +  H P+   T    WS L+SY+++ K     C+ C   + + IT  
Sbjct: 452 VTKVHLWKLYRDAAPEHGPVAESTFRKLWSDLLSYVVVAKPATDLCWTC-QQNNNLITRQ 510

Query: 206 VGITFVYLHTKNST 247
            GI+ +Y  TK  T
Sbjct: 511 FGISDIYA-TKELT 523


>UniRef50_Q7RG50 Cluster: Putative uncharacterized protein PY04499;
            n=1; Plasmodium yoelii yoelii|Rep: Putative
            uncharacterized protein PY04499 - Plasmodium yoelii
            yoelii
          Length = 1784

 Score = 31.9 bits (69), Expect = 9.6
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 67   IEAAFPNKVKDEPFTLVTINKLFNY*KEILSVLLLCSM 180
            IE   PNK++D P ++ T N L+NY K +   +L+ S+
Sbjct: 1256 IEKYDPNKLEDIPSSIRTANDLYNYIKRMNMKILIASV 1293


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 495,550,987
Number of Sequences: 1657284
Number of extensions: 9108888
Number of successful extensions: 18580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18579
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34156095254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)