Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0175.Seq
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    29   0.33 
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    28   0.77 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   2.3  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   5.4  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    25   7.2  

>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +2

Query: 227 LHTKNSTLLPWYTTPNLVHTKTKCSQQNSSRGRDKRET**NVANNSK*IR*QNFNYLTTS 406
           L T +S  L  YT+PNL+     C +  S   R+ ++   +  +N + I  Q F   ++S
Sbjct: 170 LETPSSYRLQVYTSPNLLRVNAPCRKSLSEMLRELKDIEDDYGSNEEKIL-QEFESFSSS 228

Query: 407 ESNCMIN 427
            S  +++
Sbjct: 229 SSESLVD 235


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 198 LNSSELHLYTYIQKIVLCCLGTPHQILFTPKQNAASKI 311
           +NS+E+  + Y+   +L  +  P+ + +TPK  + SK+
Sbjct: 1   MNSNEIENFIYLNNTLLSEVPEPNSVFYTPKCFSNSKL 38


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +2

Query: 230 HTKNSTLLPWYTTPNLVHTKTK--CSQQNSSRGR 325
           H  + T  P  T  ++VH      CS Q SSRGR
Sbjct: 485 HLNDFTSFPTETAVSIVHVPLMFPCSDQTSSRGR 518


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 409 FTGS*IIKILLSNLF*IIGNISLGFA--FITTTTRILLAAFCFGVNKIWCGVP 257
           FT    IK    N   ++  IS+G +  F+   +RI+    CF +N I+ G+P
Sbjct: 247 FTAWTWIKPCFFNFVILLKRISIGDSQLFLHLHSRIVQTLCCFSLNFIYHGLP 299


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -1

Query: 355 GNISLG--FAFITTTTRILLAAFCFGVNKIWCGVPRQQST-IFCM*VYKCNSD 206
           G IS+G  + F    T  ++  F  G+  IWCG+     T I C      N+D
Sbjct: 466 GLISIGSSYLFALPVTVFVVVYFNTGLKGIWCGMILSSVTAITCQFTVLFNTD 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,177,730
Number of Sequences: 5004
Number of extensions: 42372
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)