Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0175.Seq
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17004| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_48151| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  

>SB_17004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -2

Query: 150 FFLIIK*L---INCDQCKWFVFDFIGKCSFDSPLNIHPI*DLDIG 25
           F ++I+ L   I  + C  F+  + G+   D P N+HP  D  +G
Sbjct: 11  FVIVIRSLLVRIRLEGCFTFIAVYFGQGYVDCPFNVHPSFDSSVG 55


>SB_48151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 261 TPHQILFTPKQNAASKILVVVVINAKPNEMLPIIQNK 371
           +P + +F+PK   A + +V ++IN++   +L + Q K
Sbjct: 474 SPREEIFSPKAQLAIEAIVNMIINSQVQTLLRVFQYK 510


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,308,897
Number of Sequences: 59808
Number of extensions: 294430
Number of successful extensions: 546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)