Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0175.Seq
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z67735-2|CAA91530.2|  403|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical
           protein C55B6.1a protein.
          Length = 523

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 292 CFGVNKIWCGVPRQQSTIFCM*VYKCNSDELSDPTAGPWNTTVTLIV 152
           C+G  + W  +   +S I C+     +   + DP  G +NT +  I+
Sbjct: 182 CYGSLETWLLMRSSKSNILCVEASNISPSGMFDPWIGAYNTLIMKII 228


>Z67735-2|CAA91530.2|  403|Caenorhabditis elegans Hypothetical
           protein C15A7.1 protein.
          Length = 403

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 331 FITTTTRILLAAFCF 287
           F+ TTT+ILL  FCF
Sbjct: 152 FVMTTTKILLKTFCF 166


>U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical
           protein T05A7.11 protein.
          Length = 1200

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 526 KYYEYLNYDWFCQYLFLIITQGQFLVVNQIF 434
           K+YE+L   WF   LFL I +    + NQ F
Sbjct: 765 KFYEHLKRVWFIFGLFLNIKKTILFLENQFF 795


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,883,075
Number of Sequences: 27780
Number of extensions: 236293
Number of successful extensions: 482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)