Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0175.Seq
         (538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45800.1 68416.m04957 hypothetical protein                          30   0.85 
At1g14150.2 68414.m01672 oxygen evolving enhancer 3 (PsbQ) famil...    28   3.4  
At1g14150.1 68414.m01673 oxygen evolving enhancer 3 (PsbQ) famil...    28   3.4  
At4g17140.1 68417.m02580 pleckstrin homology (PH) domain-contain...    27   6.0  
At5g13660.1 68418.m01590 expressed protein                             27   7.9  

>At3g45800.1 68416.m04957 hypothetical protein
          Length = 563

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 103 PFTLVTINKLFNY*KEILSVLLLCSMVPQS-DHLTRRNYICILTY 234
           PF L+T + +F+  K ++S    C +  ++ D  +R NY+C +++
Sbjct: 72  PFNLITDSLIFHSSKRLVSSSCFCQVPSKAMDEPSRHNYLCSISH 116


>At1g14150.2 68414.m01672 oxygen evolving enhancer 3 (PsbQ) family
           protein extrinsic pII protein; contains Pfam profile
           PF05757: Oxygen evolving enhancer protein 3 (PsbQ)
          Length = 162

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 243 VLCCLGTPHQILFTPKQNAASKILVVVV 326
           V+CC G P Q +FT ++   S I   V+
Sbjct: 29  VVCCTGEPQQDIFTRRRTLTSLITFTVI 56


>At1g14150.1 68414.m01673 oxygen evolving enhancer 3 (PsbQ) family
           protein extrinsic pII protein; contains Pfam profile
           PF05757: Oxygen evolving enhancer protein 3 (PsbQ)
          Length = 190

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 243 VLCCLGTPHQILFTPKQNAASKILVVVV 326
           V+CC G P Q +FT ++   S I   V+
Sbjct: 29  VVCCTGEPQQDIFTRRRTLTSLITFTVI 56


>At4g17140.1 68417.m02580 pleckstrin homology (PH) domain-containing
           protein contains Pfam profile PF00169: PH domain
          Length = 1322

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 77  HFPIKSKTNHLHWSQLISYLIIKKKYYQCY 166
           H P++  T  + W  ++ Y  ++K+Y   Y
Sbjct: 297 HLPLQFLTGRMSWEHVLKYTSLRKRYITQY 326


>At5g13660.1 68418.m01590 expressed protein 
          Length = 537

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 112 LVTINKLFNY*KEILSVLLLCSMVPQSDHLTRRNY 216
           + +++  +N  +E    LL C  VP+ D +T  NY
Sbjct: 237 IFSVSSSYNKGQENFMPLLSCEQVPEYDFMTESNY 271


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,806,107
Number of Sequences: 28952
Number of extensions: 202088
Number of successful extensions: 375
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)