Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0174.Seq
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    29   0.28 
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   0.64 
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   2.6  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    26   3.4  
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c...    25   5.9  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   5.9  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +3

Query: 207 THKDYTSTQICVSNCKSVFYAMFYGGLAECKQEIEVPDVEPSAFLA--LLKYIYCDEIQL 380
           TH+ Y   +  +  C+  F  M  G   E  QE+ V  +  S+ +   +LK++Y D+  +
Sbjct: 314 THR-YPVHRAIMCRCE-YFLDMLAGPFLESNQELPVLSLPFSSSVVEIVLKFLYTDKTDI 371

Query: 381 EADTVLSTLYVA 416
             +  L  +YVA
Sbjct: 372 APELALDVVYVA 383


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +3

Query: 156 VQ*PANV*YYFYCRSPRTHKDYTSTQICVSNCKSVFYAMFYGGLAECKQEIEVP-DVEPS 332
           +Q P+      +  SP  + D     ICVS   +    +F  GL    QEIE   + E S
Sbjct: 453 LQLPSTANSISFLSSPPNNNDIIDKVICVSYANNTILGLFDFGLCAFTQEIEFSNEKEKS 512

Query: 333 AFLALLKY 356
               LL +
Sbjct: 513 PIQQLLTF 520


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 100 GWRYQEVLANSLATWSHLMTHKVREAR 20
           GWR  E+L+ SL+  S  +  K RE R
Sbjct: 827 GWRSPEILSGSLSQQSKEIQVKTREGR 853


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 186 SNIRH*LVIEHSSVSLSN 133
           SN+RH  + EHSS++ SN
Sbjct: 423 SNVRHLKIAEHSSLAYSN 440


>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 315

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 89  PGGAGELAGDVVALDDPQGEGG 24
           P   G+L GD+V+   P+ +GG
Sbjct: 183 PNEEGQLQGDIVSFSAPREKGG 204


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 249 CKSVFYAMFYGGLAECKQEIEV 314
           C  +FY M +   A  KQEIEV
Sbjct: 483 CCDIFYLMVFSLRAHFKQEIEV 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,462
Number of Sequences: 5004
Number of extensions: 37964
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)