Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0174.Seq
         (479 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.          28   0.19 
AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    26   0.77 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    24   3.1  

>AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 21  RASLTLWVIKCD--HVASEFASTSWYRHPGSQLAS 119
           R S+    I CD  H  S+     WY+HP ++L+S
Sbjct: 311 RPSIPSRWIACDTLHAISKVMKECWYQHPAARLSS 345


>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal
           ion/proton exchanger 3 protein.
          Length = 1221

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 124 KPTVRERNAAMFNNQLMSDITFIVGAPGHTKI 219
           KPT+ ER    F + +M+ I  IVG  G+  I
Sbjct: 661 KPTMNERIHERFMDHMMAGIEDIVGKTGNYNI 692


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 95  AVPGGAGELAGDVVALDDPQGEGG 24
           AV  G G   GD V    P G GG
Sbjct: 509 AVTPGGGRAEGDKVTFQIPNGGGG 532


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 494,510
Number of Sequences: 2352
Number of extensions: 9955
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 41863041
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)