Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0174.Seq
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   1.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   3.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   3.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.2  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +1

Query: 124 KPTVRERNAAMFNNQLMSDITFIVGAPGH-TKIIPAHKYVLA--TASQSSMLCF 276
           +PTV++      N QL SD+      PGH +  +  H+   A  T S  ++ CF
Sbjct: 252 EPTVQQHQPVTVNRQLNSDV-----QPGHGSPPVKQHRSSSASTTCSGHTVRCF 300


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 453 HMP*PDEVQYIFWLHRELIIQY 388
           HMP     Q  ++LH++L+ +Y
Sbjct: 251 HMPKEIRGQLYYFLHKQLMTRY 272


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 453 HMP*PDEVQYIFWLHRELIIQY 388
           HMP     Q  ++LH++L+ +Y
Sbjct: 251 HMPKEIRGQLYYFLHKQLMTRY 272


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 94  RYQEVLANSLATWSHLMTH 38
           RY+E  +N    W H  TH
Sbjct: 178 RYKEEESNENYNWEHKETH 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,670
Number of Sequences: 438
Number of extensions: 2592
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)