Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0172.Seq
         (439 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   3.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   3.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.8  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    20   9.0  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 438 PPSKEAPLPSDPAQTQSP 385
           PP ++ P+   P Q Q P
Sbjct: 203 PPHQQPPIQQQPNQGQQP 220


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 438 PPSKEAPLPSDPAQTQSP 385
           PP ++ P+   P Q Q P
Sbjct: 205 PPHQQPPIQQQPNQGQQP 222


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 392 CVCAGSXG 415
           CVCAGS G
Sbjct: 920 CVCAGSTG 927


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -1

Query: 433 IQRGXITXRSGTNTVTK 383
           + R  ++ + GTNT+T+
Sbjct: 526 LDRFAVSLKQGTNTITR 542


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,324
Number of Sequences: 336
Number of extensions: 1339
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)