Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0172.Seq
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    73   1e-14
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    49   4e-07
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    38   9e-04
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   1.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   3.9  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 73.3 bits (172), Expect = 1e-14
 Identities = 34/50 (68%), Positives = 40/50 (80%)
 Frame = -1

Query: 403 GTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGKS 254
           G N V  L+  KKA+LV+IA DVDPIE V+FLPALC+KMGVPY IVK K+
Sbjct: 135 GLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKA 184



 Score = 63.3 bits (147), Expect = 2e-11
 Identities = 23/62 (37%), Positives = 40/62 (64%)
 Frame = -3

Query: 266 QGQVRLGALVHRXTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGN 87
           + + RLG ++H+ T   LA+T V   D+   + +V A+  NF+ +Y+E R+ WGGG++G 
Sbjct: 181 KNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSAKYDESRRKWGGGIMGG 240

Query: 86  KS 81
           K+
Sbjct: 241 KT 242


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 48.8 bits (111), Expect = 4e-07
 Identities = 22/53 (41%), Positives = 30/53 (56%)
 Frame = -1

Query: 409 RSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGKSA 251
           R G N  TK +    ++ +V+A D +PIE +L LP LC    VPY  V  K+A
Sbjct: 33  RKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAA 85


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 37.5 bits (83), Expect = 9e-04
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 403 GTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGK 257
           G   V K V   +  LV++A D+ P++ +  +P LC    VPY     K
Sbjct: 57  GVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSK 105


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 409 RSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKM 287
           +SG+  +T+ +      +V I + +D +E    LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 438 PPSKEAPLPSDPAQTQ 391
           P  +E PLPS+P+Q Q
Sbjct: 502 PKEEERPLPSEPSQNQ 517


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,333,131
Number of Sequences: 5004
Number of extensions: 21208
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)