Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0172.Seq
(439 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 84 5e-17
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 84 5e-17
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 74 4e-14
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 44 4e-05
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 43 9e-05
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 38 0.005
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 38 0.005
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 32 0.18
05_03_0629 + 16376575-16376689,16376792-16376839,16376927-163770... 30 0.71
04_01_0579 - 7515242-7516241,7516366-7516393,7516574-7516631 29 1.6
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 28 3.8
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 28 3.8
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166... 27 8.7
06_03_0694 + 23580116-23580316,23580699-23580701,23581682-235820... 27 8.7
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 83.8 bits (198), Expect = 5e-17
Identities = 33/62 (53%), Positives = 51/62 (82%)
Frame = -3
Query: 266 QGQVRLGALVHRXTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGN 87
+G+ RLG++VH+ T + L LT V++ D+ FSK++EAIK NFN++++E+RK WGGGV+G+
Sbjct: 177 KGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGS 236
Query: 86 KS 81
KS
Sbjct: 237 KS 238
Score = 83.4 bits (197), Expect = 7e-17
Identities = 39/55 (70%), Positives = 44/55 (80%)
Frame = -1
Query: 418 ITXRSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGKS 254
I + G N VT L+ KAQLVVIAHDVDPIE V++LPALCRKM VPYCIVKGK+
Sbjct: 126 IVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKA 180
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 83.8 bits (198), Expect = 5e-17
Identities = 32/62 (51%), Positives = 52/62 (83%)
Frame = -3
Query: 266 QGQVRLGALVHRXTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGN 87
+G+ RLG++VH+ T + L LT V++ D+ FSK++EAIK+NFN++++E+RK WGGG++G+
Sbjct: 162 KGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKSNFNDKFDEVRKKWGGGIMGS 221
Query: 86 KS 81
KS
Sbjct: 222 KS 223
Score = 81.0 bits (191), Expect = 4e-16
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = -1
Query: 418 ITXRSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGKS 254
I + G + VT L+ KAQLVVIAHDVDPIE V++LPALCRKM +PYCIVKGK+
Sbjct: 111 IVVKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKA 165
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 74.1 bits (174), Expect = 4e-14
Identities = 29/54 (53%), Positives = 44/54 (81%)
Frame = -3
Query: 242 LVHRXTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 81
+VH+ T + L LT V++ D+ FSK++EAIK NFN++++E+RK WGGGV+G+KS
Sbjct: 155 IVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKS 208
Score = 64.9 bits (151), Expect = 3e-11
Identities = 36/58 (62%), Positives = 41/58 (70%)
Frame = -1
Query: 418 ITXRSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGKSASV 245
I + G N VT L+ KAQLVVIAHDVDPIE V++LPALCRKM IV K+ASV
Sbjct: 110 IVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKME----IVHKKTASV 163
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 44.4 bits (100), Expect = 4e-05
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = -1
Query: 409 RSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGKSA 251
+ G N TK + A+ VV+A D +P+E +L LP L VPY V K A
Sbjct: 34 KKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQA 86
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 43.2 bits (97), Expect = 9e-05
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = -1
Query: 409 RSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGKSA 251
+ G N TK + ++ VV+A D +P+E +L LP L VPY V K A
Sbjct: 36 KKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQA 88
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 37.5 bits (83), Expect = 0.005
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -1
Query: 409 RSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGK 257
+ G V K + + L +IA ++ PI+ + +P LC + +PY V K
Sbjct: 46 KRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSK 96
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 37.5 bits (83), Expect = 0.005
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 409 RSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGK 257
+ G V K + L VIA ++ PI+ + +P LC + +PY V K
Sbjct: 46 KRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSK 96
>02_01_0014 -
87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 32.3 bits (70), Expect = 0.18
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +1
Query: 10 YSAQPCFCANSRALAFSSLA---MRALDLLPRTPPPQCLRSSS*RS-LKFVLMASTTFEK 177
Y A PCFCA + + LA ++AL + + P CLR+ + + L ++ ST ++
Sbjct: 175 YGAIPCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQR 234
Query: 178 EARSPDSTFVR 210
A S + R
Sbjct: 235 VALSTAANICR 245
>05_03_0629 +
16376575-16376689,16376792-16376839,16376927-16377012,
16377791-16377878,16378387-16378472,16378604-16378690,
16379111-16379293,16379387-16379470,16379590-16379651,
16379752-16379827,16379906-16379968,16380060-16380141,
16380840-16380916,16381502-16381549,16381681-16381743
Length = 415
Score = 30.3 bits (65), Expect = 0.71
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +1
Query: 34 ANSRALAFSSLAMRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPD 195
A + + A SS R L R+PPP LR + R + V A T E +A +P+
Sbjct: 8 AAASSTAASSATFRPPLLSLRSPPPSSLRLNRRRHFQVVRAAETDKETKANAPE 61
>04_01_0579 - 7515242-7516241,7516366-7516393,7516574-7516631
Length = 361
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 31 CANSRALAFSSLAMRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEK 177
CA S A+ FS+ ++ PRT + ++ S F T+FEK
Sbjct: 182 CARSEAMIFSANLCARINFAPRTTRDRIIQGPKTISQMFPFFKGTSFEK 230
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 403 GTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGV 281
G K + AQL V+A D D + V + ALC + V
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNV 81
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 403 GTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGV 281
G K + AQL V+A D D + V + ALC + V
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNV 81
>07_03_0909 + 22512313-22512474,22513151-22513465,22513539-22516633,
22516812-22516910,22517031-22517379
Length = 1339
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 403 GTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYC 272
G TV L+ KK +++ +AHD+ L P K+ + YC
Sbjct: 1040 GVFTVAGLLKFKKEEILQLAHDLCDEFQALGKPGDAAKIALEYC 1083
>06_03_0694 +
23580116-23580316,23580699-23580701,23581682-23582065,
23582299-23582523
Length = 270
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1
Query: 43 RALAFSSLAMRALDLLPRTPPPQCLRSSS 129
+A+A+S A ALDLL +TPPP ++S
Sbjct: 73 KAIAWS--AAEALDLLEQTPPPSAGSAAS 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,917,241
Number of Sequences: 37544
Number of extensions: 181758
Number of successful extensions: 540
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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