Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0172.Seq
         (439 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        87   5e-18
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              87   5e-18
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        50   6e-07
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          40   7e-04
SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)                28   2.9  
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)           28   2.9  
SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06)                  28   2.9  
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)               28   3.9  
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   27   5.1  
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.1  

>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 87.4 bits (207), Expect = 5e-18
 Identities = 40/50 (80%), Positives = 44/50 (88%)
 Frame = -1

Query: 403 GTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGKS 254
           G N +T LV NKKAQLVVIAHDVDPIE V++LPALCRKM VPYCIVKGK+
Sbjct: 48  GINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKA 97



 Score = 80.6 bits (190), Expect = 5e-16
 Identities = 30/62 (48%), Positives = 47/62 (75%)
 Frame = -3

Query: 266 QGQVRLGALVHRXTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGN 87
           +G+ RLG +VH+   T L +T V   D+ S + ++E++KTN+NER++E+RKHWGGG++G 
Sbjct: 94  KGKARLGKVVHKKNATALCITGVRQEDKNSLNNLIESVKTNYNERFDEIRKHWGGGIMGP 153

Query: 86  KS 81
           KS
Sbjct: 154 KS 155


>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 87.4 bits (207), Expect = 5e-18
 Identities = 40/50 (80%), Positives = 44/50 (88%)
 Frame = -1

Query: 403 GTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGKS 254
           G N +T LV NKKAQLVVIAHDVDPIE V++LPALCRKM VPYCIVKGK+
Sbjct: 139 GINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKA 188



 Score = 80.6 bits (190), Expect = 5e-16
 Identities = 30/62 (48%), Positives = 47/62 (75%)
 Frame = -3

Query: 266 QGQVRLGALVHRXTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGN 87
           +G+ RLG +VH+   T L +T V   D+ S + ++E++KTN+NER++E+RKHWGGG++G 
Sbjct: 185 KGKARLGKVVHKKNATALCITGVRQEDKNSLNNLIESVKTNYNERFDEIRKHWGGGIMGP 244

Query: 86  KS 81
           KS
Sbjct: 245 KS 246


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 50.4 bits (115), Expect = 6e-07
 Identities = 22/53 (41%), Positives = 31/53 (58%)
 Frame = -1

Query: 409 RSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGKSA 251
           R G N  TK +    A+ +V+A D +P+E +L LP LC    VPY  V+ K+A
Sbjct: 95  RKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAA 147


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 40.3 bits (90), Expect = 7e-04
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 415 TXRSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGK 257
           T R G   V K +   +   V++A DV PI+ +  +P +C    +PY  V  K
Sbjct: 98  TLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150


>SB_29025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 438 PPSKEAPLPSDPAQTQS 388
           PP+KEAPLP  PAQ ++
Sbjct: 139 PPAKEAPLPPPPAQQEA 155


>SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)
          Length = 189

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 94  RTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDST 201
           R    + +RS S RSL   L  ST+ EKEA+  D+T
Sbjct: 113 RVRKKEIIRSGSSRSLPECLRISTSKEKEAKDIDNT 148


>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
          Length = 437

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 169 FEKEARSPDSTFVRAKHVHVLRCTSAPRRTCP 264
           F     + +S   R +H H+ RCTSAP  + P
Sbjct: 61  FNNFTNTTESWPQRKRHFHLRRCTSAPEPSSP 92


>SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06)
          Length = 1160

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 4   KLYSAQPCFCANSRALAFSSLAMRALDLLPRTPPPQCLRSSS 129
           +L S  PCFCANS     +  + R    L +TP  Q + +SS
Sbjct: 575 QLVSTSPCFCANSSNCQHALSSSRQ---LVKTPSRQLVNASS 613


>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -1

Query: 403 GTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVP 278
           G +   K +  ++A L +++++ D    V  + ALC + G+P
Sbjct: 41  GLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIP 82


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 188 DRASFSKVVEAIKTNFNERYEELRKHWGG 102
           DRAS+  + EA + +  ER EEL K W G
Sbjct: 635 DRASYYNMAEAAEVS--ERVEELVKQWRG 661


>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 312  SCQRYAVKWAYHTALSRASPPRCT-CTPQXMHMLSSNKC 199
            SC R+ V+W Y T   + +P   T C     + ++  KC
Sbjct: 3164 SCSRFTVRWFYDTNRGKCAPFVYTGCGGNENNFMNEQKC 3202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,819,479
Number of Sequences: 59808
Number of extensions: 193790
Number of successful extensions: 478
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)