Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0172.Seq
         (439 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal prot...    92   9e-21
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   2.7  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            24   2.7  

>AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal protein
           rpL7a protein.
          Length = 271

 Score = 91.9 bits (218), Expect = 9e-21
 Identities = 36/62 (58%), Positives = 52/62 (83%)
 Frame = -3

Query: 266 QGQVRLGALVHRXTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGN 87
           +G+ RLG LV+R TCTC+ALT  E+ D+ + +K+VE IKTNFN+R++++R+HWGGG+LG 
Sbjct: 191 KGKARLGTLVYRKTCTCVALTQFENADKPNLAKLVETIKTNFNDRFDDIRRHWGGGLLGP 250

Query: 86  KS 81
           KS
Sbjct: 251 KS 252



 Score = 91.1 bits (216), Expect = 2e-20
 Identities = 39/52 (75%), Positives = 46/52 (88%)
 Frame = -1

Query: 409 RSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGKS 254
           R G N+V K+V  KKAQLV+IAHDVDPIE V++LPALCRKMGVPYCI+KGK+
Sbjct: 143 RQGINSVVKMVEQKKAQLVIIAHDVDPIELVVYLPALCRKMGVPYCIIKGKA 194


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 179  SFSKVVEAIKTNFNERYEELRKHWG 105
            +FS+ +     NF+  + EL++ WG
Sbjct: 1855 TFSRTIPFFGGNFSPEHTELQRTWG 1879


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 179  SFSKVVEAIKTNFNERYEELRKHWG 105
            +FS+ +     NF+  + EL++ WG
Sbjct: 1856 TFSRTIPFFGGNFSPEHTELQRTWG 1880


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 359,796
Number of Sequences: 2352
Number of extensions: 6196
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 36568146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)