Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0172.Seq
(439 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 81 3e-16
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 81 3e-16
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 49 2e-06
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 35 0.030
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr... 29 1.5
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively... 29 1.5
AC006769-16|AAF60588.2| 338|Caenorhabditis elegans Serpentine r... 28 2.6
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 81.0 bits (191), Expect = 3e-16
Identities = 35/55 (63%), Positives = 45/55 (81%)
Frame = -1
Query: 415 TXRSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGKSA 251
T R G NT+T+LV ++AQLV+IAHDV+P+E VL LPALCRK VPY I+KGK++
Sbjct: 136 TVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKAS 190
Score = 71.7 bits (168), Expect = 2e-13
Identities = 29/63 (46%), Positives = 45/63 (71%)
Frame = -3
Query: 266 QGQVRLGALVHRXTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGN 87
+G+ LG +V R T +AL +V D+++ +K+VE + NF+ER+EE+RKHWGGGV+
Sbjct: 186 KGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSA 245
Query: 86 KSN 78
KS+
Sbjct: 246 KSD 248
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 81.0 bits (191), Expect = 3e-16
Identities = 35/55 (63%), Positives = 45/55 (81%)
Frame = -1
Query: 415 TXRSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGKSA 251
T R G NT+T+LV ++AQLV+IAHDV+P+E VL LPALCRK VPY I+KGK++
Sbjct: 116 TVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKAS 170
Score = 71.7 bits (168), Expect = 2e-13
Identities = 29/63 (46%), Positives = 45/63 (71%)
Frame = -3
Query: 266 QGQVRLGALVHRXTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGN 87
+G+ LG +V R T +AL +V D+++ +K+VE + NF+ER+EE+RKHWGGGV+
Sbjct: 166 KGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSA 225
Query: 86 KSN 78
KS+
Sbjct: 226 KSD 228
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 48.8 bits (111), Expect = 2e-06
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = -1
Query: 409 RSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGKSA 251
+ G N TK + ++++V+A D +P+E +L LP LC VPY V+ K+A
Sbjct: 36 KKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAA 88
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 34.7 bits (76), Expect = 0.030
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = -1
Query: 424 GXITXRSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGK 257
G T R G V K + + + ++A +V PI+ +P +C + +PY + +
Sbjct: 65 GDKTLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSR 120
>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
protein ZC504.4d protein.
Length = 1072
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 70 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 219
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
protein ZC504.4c protein.
Length = 1096
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 70 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 219
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
protein ZC504.4b protein.
Length = 1082
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 70 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 219
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
protein ZC504.4a protein.
Length = 1087
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 70 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 219
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 1087
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 70 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 219
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>AC006769-16|AAF60588.2| 338|Caenorhabditis elegans Serpentine
receptor, class j protein20 protein.
Length = 338
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 337 VDPIEXVLFLPALCRKMGVPYCIVKGKSASV 245
+DP+ +L LPAL R++ P +G S SV
Sbjct: 294 LDPLAIILLLPALRRRLPNPIRKYRGNSVSV 324
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,796,904
Number of Sequences: 27780
Number of extensions: 134581
Number of successful extensions: 330
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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