Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0172.Seq
(439 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 89 1e-18
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 85 2e-17
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 43 8e-05
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 43 8e-05
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 43 1e-04
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 42 2e-04
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.002
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 30 0.79
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 30 0.79
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 28 2.4
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 28 2.4
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 28 2.4
At4g19060.1 68417.m02808 disease resistance protein-related cont... 27 4.2
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 89.0 bits (211), Expect = 1e-18
Identities = 36/62 (58%), Positives = 51/62 (82%)
Frame = -3
Query: 266 QGQVRLGALVHRXTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGN 87
+G+ RLGA+VH+ T +CL LT V++ D+ FSK++EAIK NFN++YEE RK WGGG++G+
Sbjct: 176 KGKSRLGAVVHQKTASCLCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGS 235
Query: 86 KS 81
KS
Sbjct: 236 KS 237
Score = 84.6 bits (200), Expect = 3e-17
Identities = 40/55 (72%), Positives = 44/55 (80%)
Frame = -1
Query: 418 ITXRSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGKS 254
I + G N VT L+ KAQLVVIAHDVDPIE V++LPALCRKM VPYCIVKGKS
Sbjct: 125 IVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKS 179
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 85.0 bits (201), Expect = 2e-17
Identities = 35/62 (56%), Positives = 49/62 (79%)
Frame = -3
Query: 266 QGQVRLGALVHRXTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGN 87
+G+ RLGA+VH+ T L LT V++ D+ FSK++EAIK NFN++YEE RK WGGG++G+
Sbjct: 175 KGKSRLGAVVHQKTAAALCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGS 234
Query: 86 KS 81
KS
Sbjct: 235 KS 236
Score = 84.6 bits (200), Expect = 3e-17
Identities = 40/55 (72%), Positives = 44/55 (80%)
Frame = -1
Query: 418 ITXRSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGKS 254
I + G N VT L+ KAQLVVIAHDVDPIE V++LPALCRKM VPYCIVKGKS
Sbjct: 124 IVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKS 178
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 43.2 bits (97), Expect = 8e-05
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = -1
Query: 409 RSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGKSA 251
+ G N TK + ++ VV+A D +P+E +L LP L VPY V K A
Sbjct: 36 KKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQA 88
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 43.2 bits (97), Expect = 8e-05
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = -1
Query: 409 RSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGKSA 251
+ G N TK + ++ VV+A D +P+E +L LP L VPY V K A
Sbjct: 36 KKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQA 88
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = -1
Query: 409 RSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGKSA 251
+ G N TK + ++ +V+A D +P+E +L LP L VPY V K A
Sbjct: 36 KKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQA 88
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = -1
Query: 409 RSGTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGK 257
+ G V K + + L VIA ++ PI+ + LP LC + GVPY V K
Sbjct: 52 KRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSK 102
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -1
Query: 394 TVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALCRKMGVPYCIVKGKSA 251
+ TK + ++ VV+A D +P+E +L LP L VPY V K A
Sbjct: 73 SATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQA 120
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 29.9 bits (64), Expect = 0.79
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 403 GTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALC 296
G + KL+ + AQLVV+A D + + V + ALC
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALC 82
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 29.9 bits (64), Expect = 0.79
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 403 GTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALC 296
G + KL+ + AQLVV+A D + + V + ALC
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALC 82
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 403 GTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALC 296
G + KL+ + AQL V+A D + + V + ALC
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 403 GTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALC 296
G + KL+ + AQL V+A D + + V + ALC
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 403 GTNTVTKLVXNKKAQLVVIAHDVDPIEXVLFLPALC 296
G + KL+ + AQL V+A D + + V + ALC
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82
>At4g19060.1 68417.m02808 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 383
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -3
Query: 185 RASFSKVVEAIKTNFNERYEE 123
++ F K +E IK++FNE YE+
Sbjct: 18 KSEFDKELEKIKSSFNEEYEK 38
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,414,750
Number of Sequences: 28952
Number of extensions: 128557
Number of successful extensions: 432
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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