Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0171.Seq
         (548 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    35   1.1  
UniRef50_UPI00006CC4D5 Cluster: hypothetical protein TTHERM_0013...    34   2.5  
UniRef50_UPI00006CFB44 Cluster: Lanthionine synthetase C-like pr...    33   4.4  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 35.1 bits (77), Expect = 1.1
 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
 Frame = -3

Query: 213 CNVFFLLLRWV--------VKWLLEPIDIYNVNAPPTLRYKF 112
           C   FLLLRWV        +     P  +Y+VNAPPT RYKF
Sbjct: 150 CLSRFLLLRWVDELTAHLVLSGYWSPRHLYDVNAPPTSRYKF 191


>UniRef50_UPI00006CC4D5 Cluster: hypothetical protein
           TTHERM_00139720; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00139720 - Tetrahymena
           thermophila SB210
          Length = 1411

 Score = 33.9 bits (74), Expect = 2.5
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
 Frame = -2

Query: 415 KKEIVLIFFNSQLGXIFL*FMATLIFENHS---SHLPYCICVDYVYRYDSKIK-----Y* 260
           KK+I+LIFF   +  + L   +   F NHS    ++P+    D  + Y +KIK     + 
Sbjct: 304 KKDIMLIFFWEHMNYM-LKIRSDAHFVNHSVMNRYIPFSTKYDPFFVYPNKIKGDCAQFS 362

Query: 259 *LGNRIIEELNSCVDL 212
              N+I E +N C+DL
Sbjct: 363 QFSNKIQESINGCLDL 378


>UniRef50_UPI00006CFB44 Cluster: Lanthionine synthetase C-like
           protein; n=1; Tetrahymena thermophila SB210|Rep:
           Lanthionine synthetase C-like protein - Tetrahymena
           thermophila SB210
          Length = 459

 Score = 33.1 bits (72), Expect = 4.4
 Identities = 27/131 (20%), Positives = 60/131 (45%), Gaps = 6/131 (4%)
 Frame = +2

Query: 8   VRAGRYHRPAYSCREAVMRFGLKGGAA--VITILRP*NLYLKVGGAFTL*MSMGSSNHLT 181
           V+ G     A   +++ +++ +  GA   +I  ++    + ++  A +  +   + N L 
Sbjct: 46  VKVGEKRAIASEQKQSDVQYNMFDGAGSYLIAYVKLFLFFQRINQADSNFLEQNTPNQLK 105

Query: 182 THLSNKKKTLQVNARIQFLYNSISQS----LIFYFTIVSVYVIHTYAIREMRAMIFKDQC 349
            +L  +K    +  +IQ L N I QS    + F+F+ V VY++      E++     D  
Sbjct: 106 QYLKKEKYEQDIVQQIQVLENLIQQSKFRDITFFFSPVGVYLVSMIYYNEVKDQKKFDNN 165

Query: 350 CHKLKEYSTKL 382
             K+ E++ ++
Sbjct: 166 LQKILEFTPEI 176


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 507,907,695
Number of Sequences: 1657284
Number of extensions: 9333420
Number of successful extensions: 17395
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17391
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)