Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0171.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0262 - 1921625-1921792,1922023-1922163,1922942-1923344,192...    27   9.9  
11_01_0264 - 2002884-2003051,2003313-2003453,2004211-2004613,200...    27   9.9  

>12_01_0262 -
           1921625-1921792,1922023-1922163,1922942-1923344,
           1923510-1923692,1923806-1924056,1925069-1925674
          Length = 583

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 336 KIIARISRIAYVWITYTDTIV 274
           K ++    I Y+WI YTDT+V
Sbjct: 287 KWLSENKHIKYLWIPYTDTVV 307


>11_01_0264 -
           2002884-2003051,2003313-2003453,2004211-2004613,
           2004778-2004960,2005074-2005324,2006323-2006928
          Length = 583

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 336 KIIARISRIAYVWITYTDTIV 274
           K ++    I Y+WI YTDT+V
Sbjct: 287 KWLSENKHIKYLWIPYTDTVV 307


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,333,168
Number of Sequences: 37544
Number of extensions: 246754
Number of successful extensions: 439
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)