Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0170.Seq
         (398 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   1.1  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       21   5.9  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   5.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   5.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   5.9  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   5.9  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   5.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   7.8  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    20   7.8  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    20   7.8  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 103 FPVTSAGMLWLICSSTV 153
           F V   G +WL+ SSTV
Sbjct: 489 FLVNDFGFIWLVLSSTV 505


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = +3

Query: 150 RDPEESEKDEQQAKEQXXXXXXXXXXXXXHED 245
           R+ +E  K +QQ K+Q             H D
Sbjct: 79  REEQERHKQQQQEKQQKIEQQTHSSIHQHHHD 110


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 136 STTTSQRWSRGSTPRSLNTSRANNHHIKPIEW 41
           STT    W+R  +  S + S+      KP +W
Sbjct: 405 STTPRPEWARPPSTPSADGSKPVQTTPKPGQW 436


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -3

Query: 156 GHGRRTNQPQHPSAGHGEAH 97
           GH  +   PQH    H + H
Sbjct: 168 GHHMQEQHPQHHQPHHQQQH 187


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -3

Query: 156 GHGRRTNQPQHPSAGHGEAH 97
           GH  +   PQH    H + H
Sbjct: 170 GHHMQEQHPQHHQPHHQQQH 189


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = +3

Query: 150 RDPEESEKDEQQAKEQXXXXXXXXXXXXXHED 245
           R+ +E  K +QQ K+Q             H D
Sbjct: 230 REEQERHKQQQQEKQQKIEQQTHSSIHQHHHD 261


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = +3

Query: 150 RDPEESEKDEQQAKEQXXXXXXXXXXXXXHED 245
           R+ +E  K +QQ K+Q             H D
Sbjct: 289 REEQERHKQQQQEKQQKIEQQTHSSIHQHHHD 320


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 53  TNRVGRLGVAW 21
           TNR G  G+AW
Sbjct: 415 TNRFGTSGLAW 425


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -1

Query: 233 RSNYFWFSWY 204
           +S+YF+FS+Y
Sbjct: 52  KSDYFYFSFY 61


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -1

Query: 233 RSNYFWFSWY 204
           +S+YF+FS+Y
Sbjct: 52  KSDYFYFSFY 61


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,082
Number of Sequences: 336
Number of extensions: 1823
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)