Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0170.Seq
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    89   2e-19
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    86   2e-18
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   1.9  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   2.5  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   2.5  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    25   3.3  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    25   4.3  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    25   4.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   7.6  
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    24   10.0 
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    24   10.0 
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    24   10.0 
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    24   10.0 

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 89.4 bits (212), Expect = 2e-19
 Identities = 40/62 (64%), Positives = 48/62 (77%)
 Frame = +3

Query: 6   VDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 185
           VDIAIP N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+FYRDPEE E++E+ 
Sbjct: 159 VDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEA 218

Query: 186 AK 191
            K
Sbjct: 219 KK 220


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 86.2 bits (204), Expect = 2e-18
 Identities = 38/60 (63%), Positives = 47/60 (78%)
 Frame = +3

Query: 6   VDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 185
           VD+AIP N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 160 VDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 48  IGLMWWLLAREVLRLRGVLPRDQRWD 125
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 103 FPVTSAGML--WLICSSTVTLKKVKRM 177
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 278 PMKPLAPVFIPVFMDRSNYFWFSW 207
           P   L P+FI  F+   + FWF+W
Sbjct: 412 PEDRLYPLFIGCFLLPISMFWFAW 435


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 311 QRVQQAGRYLQPMKPLAPVFIPVFMDRSNYFWFSW 207
           ++V +AG    P   L P+ I  F+  +  FW +W
Sbjct: 435 RQVIKAGNKPAPEARLPPMMIGSFLFPAGIFWLAW 469


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 278 PMKPLAPVFIPVFMDRSNYFWFSW 207
           P   L P+ I  FM  +  FW SW
Sbjct: 442 PEARLPPMMIGCFMFPAGIFWLSW 465


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 278 PMKPLAPVFIPVFMDRSNYFWFSW 207
           P   L P+ I  FM  +  FW SW
Sbjct: 443 PEARLPPMMIGCFMFPAGIFWLSW 466


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 146  EEQINHNIPALVTGKHTTKPQHFTCQQP 63
            E+ +   IPA  TG  T +  +FT  QP
Sbjct: 1004 EKSVQAPIPAQPTGNITIQNAYFTAPQP 1031


>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -2

Query: 145 KNKSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWE 38
           +N+S + S++ ++ + P+S  + R +N    PIE E
Sbjct: 195 QNRSNSRSKQRNKNAPPKSAPSKRKSNILDDPIEAE 230


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 292 PACCTRCSSCFWSTP 336
           P CC   SSC +S P
Sbjct: 41  PTCCVVGSSCIYSNP 55


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 145 KNKSTTTSQRWSRGSTPRSLNTSRANNHHI 56
           K+K   ++Q W   +TPRS +    N ++I
Sbjct: 414 KSKHAGSTQEWHSHTTPRSTSKHENNLNNI 443


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 112 SRGSTPRSLNTSRANNH 62
           +R STP  LN SRA+ H
Sbjct: 308 ARASTPPPLNFSRASEH 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,590,819
Number of Sequences: 5004
Number of extensions: 26871
Number of successful extensions: 99
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)